Wall clock time and date at job start Mon Mar 30 2020 02:19:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31248 * 1
3 3 Si 1.86807 * 119.99656 * 2 1
4 4 H 1.48503 * 109.46807 * 179.97438 * 3 2 1
5 5 H 1.48499 * 109.47225 * 299.99931 * 3 2 1
6 6 H 1.48498 * 109.46933 * 60.00400 * 3 2 1
7 7 C 1.39007 * 120.00424 * 179.97438 * 2 1 3
8 8 H 1.07998 * 120.00349 * 179.97438 * 7 2 1
9 9 N 1.37568 * 119.99861 * 359.97438 * 7 2 1
10 10 C 1.36671 * 126.88654 * 179.97438 * 9 7 2
11 11 C 1.34950 * 106.72691 * 180.23204 * 10 9 7
12 12 C 1.50700 * 125.48418 * 179.74349 * 11 10 9
13 13 O 1.42897 * 109.47431 * 359.97438 * 12 11 10
14 14 N 1.33453 * 109.02493 * 359.56683 * 11 10 9
15 15 N 1.28761 * 109.99122 * 0.44963 * 14 11 10
16 16 H 0.97001 * 120.00330 * 0.02562 * 1 2 3
17 17 H 1.08002 * 126.63309 * 359.96283 * 10 9 7
18 18 H 1.08994 * 109.47054 * 119.99746 * 12 11 10
19 19 H 1.09003 * 109.46414 * 239.99296 * 12 11 10
20 20 H 0.96699 * 114.00166 * 180.02562 * 13 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3125 0.0000 0.0000
3 14 2.2464 1.6178 0.0000
4 1 3.7064 1.3465 0.0006
5 1 1.8877 2.3965 -1.2125
6 1 1.8877 2.3964 1.2125
7 6 2.0076 -1.2038 0.0005
8 1 3.0876 -1.2038 0.0001
9 7 1.3198 -2.3952 0.0016
10 6 1.8564 -3.6522 0.0018
11 6 0.8203 -4.5168 -0.0023
12 6 0.9348 -6.0194 -0.0092
13 8 2.3143 -6.3920 -0.0114
14 7 -0.3221 -3.8269 0.0047
15 7 -0.0733 -2.5635 0.0035
16 1 -0.4851 0.8400 -0.0004
17 1 2.9065 -3.9046 0.0005
18 1 0.4501 -6.4248 0.8789
19 1 0.4500 -6.4166 -0.9010
20 1 2.4637 -7.3474 -0.0162
RHF calculation, no. of doubly occupied orbitals= 30
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000062296074.mol2 20
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:19:55
Heat of formation + Delta-G solvation = 38.614162 kcal
Electronic energy + Delta-G solvation = -9333.737215 eV
Core-core repulsion = 7339.764055 eV
Total energy + Delta-G solvation = -1993.973160 eV
No. of doubly occupied orbitals = 30
Molecular weight
(most abundant/longest-lived isotopes) = 169.059 amu
Computer time = 0.10 seconds
Orbital eigenvalues (eV)
-40.04498 -36.25324 -34.05058 -31.31697 -29.59694 -26.14223 -24.39607 -21.29099
-19.57104 -17.69552 -16.45399 -15.48516 -14.58408 -14.55097 -13.40339 -13.29743
-13.00783 -11.98862 -11.45100 -11.39012 -11.14377 -10.54265 -10.12724 -9.59748
-9.59275 -9.23955 -8.65707 -7.31940 -6.78333 -4.58243 2.85032 2.98311
3.05456 3.38331 3.72154 4.08702 4.59994 4.83487 4.85198 5.81685
6.08296 6.14640 6.49779 6.82746 6.99483 7.11867 7.73808 7.94194
8.13151 8.55011 9.17073 10.18212 10.22276
Molecular weight = 169.06amu
Principal moments of inertia in cm(-1)
A = 0.105256 B = 0.013265 C = 0.011856
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 265.955136 B = 2110.298727 C = 2361.104115
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.763 5.763
2 C 0.046 3.954
3 Si 0.943 3.057
4 H -0.260 1.260
5 H -0.271 1.271
6 H -0.271 1.271
7 C -0.315 4.315
8 H 0.122 0.878
9 N -0.153 5.153
10 C -0.090 4.090
11 C -0.086 4.086
12 C 0.181 3.819
13 O -0.571 6.571
14 N -0.327 5.327
15 N -0.091 5.091
16 H 0.281 0.719
17 H 0.160 0.840
18 H 0.046 0.954
19 H 0.046 0.954
20 H 0.373 0.627
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.814 -3.573 -0.028 5.995
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.390 5.390
2 C -0.173 4.173
3 Si 0.766 3.234
4 H -0.184 1.184
5 H -0.196 1.196
6 H -0.196 1.196
7 C -0.452 4.452
8 H 0.139 0.861
9 N 0.076 4.924
10 C -0.245 4.245
11 C -0.233 4.233
12 C 0.102 3.898
13 O -0.374 6.374
14 N -0.189 5.189
15 N -0.068 5.068
16 H 0.092 0.908
17 H 0.178 0.822
18 H 0.064 0.936
19 H 0.064 0.936
20 H 0.218 0.782
Dipole moment (debyes) X Y Z Total
from point charges 3.218 -2.095 -0.019 3.840
hybrid contribution 1.388 -0.252 -0.005 1.411
sum 4.606 -2.347 -0.025 5.170
Atomic orbital electron populations
1.70151 1.06430 1.28921 1.33466 1.25791 0.95803 1.00831 0.94866
0.85624 0.79714 0.79345 0.78700 1.18361 1.19603 1.19608 1.20206
0.92267 0.80533 1.52162 0.86083 1.46722 1.06770 1.04726 1.34228
1.22297 0.99464 0.84410 1.18286 1.20490 0.90105 0.94658 1.18011
1.19738 0.81099 0.90174 0.98810 1.86464 1.25837 1.27318 1.97777
1.73954 1.24907 1.00913 1.19135 1.82512 0.89108 1.06293 1.28852
0.90781 0.82242 0.93638 0.93636 0.78178
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.76 -21.20 11.89 55.49 0.66 -20.54 14
2 C 0.05 1.19 5.50 -17.52 -0.10 1.09 14
3 Si 0.94 18.61 29.55 -169.99 -5.02 13.58 14
4 H -0.26 -4.88 7.11 56.52 0.40 -4.47 14
5 H -0.27 -5.27 7.11 56.52 0.40 -4.86 14
6 H -0.27 -5.27 7.11 56.52 0.40 -4.87 14
7 C -0.32 -8.49 10.31 -14.69 -0.15 -8.64 14
8 H 0.12 2.91 7.83 -52.49 -0.41 2.50 14
9 N -0.15 -4.42 3.78 -11.47 -0.04 -4.46 14
10 C -0.09 -2.35 10.87 -16.56 -0.18 -2.53 14
11 C -0.09 -2.18 7.08 -83.06 -0.59 -2.77 14
12 C 0.18 3.43 7.67 36.01 0.28 3.71 14
13 O -0.57 -9.54 12.90 -35.23 -0.45 -10.00 14
14 N -0.33 -9.35 12.33 33.16 0.41 -8.94 14
15 N -0.09 -2.79 11.73 60.35 0.71 -2.08 14
16 H 0.28 7.02 8.31 -40.82 -0.34 6.68 14
17 H 0.16 3.69 7.83 -52.49 -0.41 3.28 14
18 H 0.05 0.79 8.14 -51.93 -0.42 0.37 14
19 H 0.05 0.79 8.14 -51.93 -0.42 0.37 14
20 H 0.37 3.84 9.12 45.56 0.42 4.26 14
LS Contribution 194.30 15.07 2.93 2.93
Total: -1.00 -33.47 194.30 -1.94 -35.41
By element:
Atomic # 1 Polarization: 3.63 SS G_CDS: -0.39 Total: 3.24 kcal
Atomic # 6 Polarization: -8.40 SS G_CDS: -0.74 Total: -9.14 kcal
Atomic # 7 Polarization: -37.76 SS G_CDS: 1.73 Total: -36.03 kcal
Atomic # 8 Polarization: -9.54 SS G_CDS: -0.45 Total: -10.00 kcal
Atomic # 14 Polarization: 18.61 SS G_CDS: -5.02 Total: 13.58 kcal
Total LS contribution 2.93 Total: 2.93 kcal
Total: -33.47 -1.94 -35.41 kcal
The number of atoms in the molecule is 20
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000062296074.mol2 20
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.025 kcal
(2) G-P(sol) polarization free energy of solvation -33.468 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.558 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.943 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.411 kcal
(6) G-S(sol) free energy of system = (1) + (5) 38.614 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.10 seconds