Wall clock time and date at job start Mon Mar 30 2020 02:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31248 * 1 3 3 Si 1.86807 * 119.99656 * 2 1 4 4 H 1.48503 * 109.46807 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47225 * 299.99931 * 3 2 1 6 6 H 1.48498 * 109.46933 * 60.00400 * 3 2 1 7 7 C 1.39007 * 120.00424 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00349 * 179.97438 * 7 2 1 9 9 N 1.37568 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.36671 * 126.88654 * 179.97438 * 9 7 2 11 11 C 1.34950 * 106.72691 * 180.23204 * 10 9 7 12 12 C 1.50700 * 125.48418 * 179.74349 * 11 10 9 13 13 O 1.42897 * 109.47431 * 359.97438 * 12 11 10 14 14 N 1.33453 * 109.02493 * 359.56683 * 11 10 9 15 15 N 1.28761 * 109.99122 * 0.44963 * 14 11 10 16 16 H 0.97001 * 120.00330 * 0.02562 * 1 2 3 17 17 H 1.08002 * 126.63309 * 359.96283 * 10 9 7 18 18 H 1.08994 * 109.47054 * 119.99746 * 12 11 10 19 19 H 1.09003 * 109.46414 * 239.99296 * 12 11 10 20 20 H 0.96699 * 114.00166 * 180.02562 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2464 1.6178 0.0000 4 1 3.7064 1.3465 0.0006 5 1 1.8877 2.3965 -1.2125 6 1 1.8877 2.3964 1.2125 7 6 2.0076 -1.2038 0.0005 8 1 3.0876 -1.2038 0.0001 9 7 1.3198 -2.3952 0.0016 10 6 1.8564 -3.6522 0.0018 11 6 0.8203 -4.5168 -0.0023 12 6 0.9348 -6.0194 -0.0092 13 8 2.3143 -6.3920 -0.0114 14 7 -0.3221 -3.8269 0.0047 15 7 -0.0733 -2.5635 0.0035 16 1 -0.4851 0.8400 -0.0004 17 1 2.9065 -3.9046 0.0005 18 1 0.4501 -6.4248 0.8789 19 1 0.4500 -6.4166 -0.9010 20 1 2.4637 -7.3474 -0.0162 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062296074.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:55 Heat of formation + Delta-G solvation = 38.614162 kcal Electronic energy + Delta-G solvation = -9333.737215 eV Core-core repulsion = 7339.764055 eV Total energy + Delta-G solvation = -1993.973160 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 169.059 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.04498 -36.25324 -34.05058 -31.31697 -29.59694 -26.14223 -24.39607 -21.29099 -19.57104 -17.69552 -16.45399 -15.48516 -14.58408 -14.55097 -13.40339 -13.29743 -13.00783 -11.98862 -11.45100 -11.39012 -11.14377 -10.54265 -10.12724 -9.59748 -9.59275 -9.23955 -8.65707 -7.31940 -6.78333 -4.58243 2.85032 2.98311 3.05456 3.38331 3.72154 4.08702 4.59994 4.83487 4.85198 5.81685 6.08296 6.14640 6.49779 6.82746 6.99483 7.11867 7.73808 7.94194 8.13151 8.55011 9.17073 10.18212 10.22276 Molecular weight = 169.06amu Principal moments of inertia in cm(-1) A = 0.105256 B = 0.013265 C = 0.011856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 265.955136 B = 2110.298727 C = 2361.104115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.046 3.954 3 Si 0.943 3.057 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.315 4.315 8 H 0.122 0.878 9 N -0.153 5.153 10 C -0.090 4.090 11 C -0.086 4.086 12 C 0.181 3.819 13 O -0.571 6.571 14 N -0.327 5.327 15 N -0.091 5.091 16 H 0.281 0.719 17 H 0.160 0.840 18 H 0.046 0.954 19 H 0.046 0.954 20 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.814 -3.573 -0.028 5.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.173 4.173 3 Si 0.766 3.234 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.452 4.452 8 H 0.139 0.861 9 N 0.076 4.924 10 C -0.245 4.245 11 C -0.233 4.233 12 C 0.102 3.898 13 O -0.374 6.374 14 N -0.189 5.189 15 N -0.068 5.068 16 H 0.092 0.908 17 H 0.178 0.822 18 H 0.064 0.936 19 H 0.064 0.936 20 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 3.218 -2.095 -0.019 3.840 hybrid contribution 1.388 -0.252 -0.005 1.411 sum 4.606 -2.347 -0.025 5.170 Atomic orbital electron populations 1.70151 1.06430 1.28921 1.33466 1.25791 0.95803 1.00831 0.94866 0.85624 0.79714 0.79345 0.78700 1.18361 1.19603 1.19608 1.20206 0.92267 0.80533 1.52162 0.86083 1.46722 1.06770 1.04726 1.34228 1.22297 0.99464 0.84410 1.18286 1.20490 0.90105 0.94658 1.18011 1.19738 0.81099 0.90174 0.98810 1.86464 1.25837 1.27318 1.97777 1.73954 1.24907 1.00913 1.19135 1.82512 0.89108 1.06293 1.28852 0.90781 0.82242 0.93638 0.93636 0.78178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.20 11.89 55.49 0.66 -20.54 14 2 C 0.05 1.19 5.50 -17.52 -0.10 1.09 14 3 Si 0.94 18.61 29.55 -169.99 -5.02 13.58 14 4 H -0.26 -4.88 7.11 56.52 0.40 -4.47 14 5 H -0.27 -5.27 7.11 56.52 0.40 -4.86 14 6 H -0.27 -5.27 7.11 56.52 0.40 -4.87 14 7 C -0.32 -8.49 10.31 -14.69 -0.15 -8.64 14 8 H 0.12 2.91 7.83 -52.49 -0.41 2.50 14 9 N -0.15 -4.42 3.78 -11.47 -0.04 -4.46 14 10 C -0.09 -2.35 10.87 -16.56 -0.18 -2.53 14 11 C -0.09 -2.18 7.08 -83.06 -0.59 -2.77 14 12 C 0.18 3.43 7.67 36.01 0.28 3.71 14 13 O -0.57 -9.54 12.90 -35.23 -0.45 -10.00 14 14 N -0.33 -9.35 12.33 33.16 0.41 -8.94 14 15 N -0.09 -2.79 11.73 60.35 0.71 -2.08 14 16 H 0.28 7.02 8.31 -40.82 -0.34 6.68 14 17 H 0.16 3.69 7.83 -52.49 -0.41 3.28 14 18 H 0.05 0.79 8.14 -51.93 -0.42 0.37 14 19 H 0.05 0.79 8.14 -51.93 -0.42 0.37 14 20 H 0.37 3.84 9.12 45.56 0.42 4.26 14 LS Contribution 194.30 15.07 2.93 2.93 Total: -1.00 -33.47 194.30 -1.94 -35.41 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -0.39 Total: 3.24 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -0.74 Total: -9.14 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 1.73 Total: -36.03 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -0.45 Total: -10.00 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.02 Total: 13.58 kcal Total LS contribution 2.93 Total: 2.93 kcal Total: -33.47 -1.94 -35.41 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062296074.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.025 kcal (2) G-P(sol) polarization free energy of solvation -33.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds