Wall clock time and date at job start Mon Mar 30 2020 02:19:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31248 * 1
3 3 Si 1.86807 * 119.99656 * 2 1
4 4 H 1.48503 * 109.46807 * 179.97438 * 3 2 1
5 5 H 1.48499 * 109.47225 * 299.99931 * 3 2 1
6 6 H 1.48498 * 109.46933 * 60.00400 * 3 2 1
7 7 C 1.39007 * 120.00424 * 179.97438 * 2 1 3
8 8 H 1.07998 * 120.00349 * 179.97438 * 7 2 1
9 9 N 1.37568 * 119.99861 * 359.97438 * 7 2 1
10 10 C 1.36671 * 126.88654 * 179.97438 * 9 7 2
11 11 C 1.34950 * 106.72691 * 180.23204 * 10 9 7
12 12 C 1.50700 * 125.48418 * 179.74349 * 11 10 9
13 13 O 1.42897 * 109.47431 * 359.97438 * 12 11 10
14 14 N 1.33453 * 109.02493 * 359.56683 * 11 10 9
15 15 N 1.28761 * 109.99122 * 0.44963 * 14 11 10
16 16 H 0.97001 * 120.00330 * 0.02562 * 1 2 3
17 17 H 1.08002 * 126.63309 * 359.96283 * 10 9 7
18 18 H 1.08994 * 109.47054 * 119.99746 * 12 11 10
19 19 H 1.09003 * 109.46414 * 239.99296 * 12 11 10
20 20 H 0.96699 * 114.00166 * 180.02562 * 13 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3125 0.0000 0.0000
3 14 2.2464 1.6178 0.0000
4 1 3.7064 1.3465 0.0006
5 1 1.8877 2.3965 -1.2125
6 1 1.8877 2.3964 1.2125
7 6 2.0076 -1.2038 0.0005
8 1 3.0876 -1.2038 0.0001
9 7 1.3198 -2.3952 0.0016
10 6 1.8564 -3.6522 0.0018
11 6 0.8203 -4.5168 -0.0023
12 6 0.9348 -6.0194 -0.0092
13 8 2.3143 -6.3920 -0.0114
14 7 -0.3221 -3.8269 0.0047
15 7 -0.0733 -2.5635 0.0035
16 1 -0.4851 0.8400 -0.0004
17 1 2.9065 -3.9046 0.0005
18 1 0.4501 -6.4248 0.8789
19 1 0.4500 -6.4166 -0.9010
20 1 2.4637 -7.3474 -0.0162
RHF calculation, no. of doubly occupied orbitals= 30
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000062296074.mol2 20
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:19:55
Heat of formation + Delta-G solvation = 10.945319 kcal
Electronic energy + Delta-G solvation = -9334.937026 eV
Core-core repulsion = 7339.764055 eV
Total energy + Delta-G solvation = -1995.172971 eV
No. of doubly occupied orbitals = 30
Molecular weight
(most abundant/longest-lived isotopes) = 169.059 amu
Computer time = 0.10 seconds
Orbital eigenvalues (eV)
-42.07811 -37.63155 -36.02996 -33.37263 -31.46049 -28.08876 -26.18293 -23.35682
-21.55489 -19.57464 -17.88739 -17.45563 -16.31402 -16.21224 -15.04815 -15.02671
-15.00470 -13.79143 -13.33614 -13.05296 -12.77467 -12.03100 -11.91389 -11.60133
-11.28364 -11.05707 -10.67688 -9.32425 -8.72240 -6.66392 1.06304 1.37192
1.59366 1.62233 2.05506 2.08406 2.71834 2.89350 3.40050 4.24098
4.45793 4.57829 4.71598 4.87386 5.09396 5.20971 5.84398 5.94024
6.55771 7.08421 7.14435 8.12726 8.29523
Molecular weight = 169.06amu
Principal moments of inertia in cm(-1)
A = 0.105256 B = 0.013265 C = 0.011856
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 265.955136 B = 2110.298727 C = 2361.104115
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.810 5.810
2 C -0.002 4.002
3 Si 1.032 2.968
4 H -0.239 1.239
5 H -0.266 1.266
6 H -0.266 1.266
7 C -0.344 4.344
8 H 0.146 0.854
9 N -0.166 5.166
10 C -0.109 4.109
11 C -0.085 4.085
12 C 0.189 3.811
13 O -0.581 6.581
14 N -0.356 5.356
15 N -0.150 5.150
16 H 0.289 0.711
17 H 0.185 0.815
18 H 0.065 0.935
19 H 0.065 0.935
20 H 0.403 0.597
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.525 -3.484 -0.035 7.397
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.437 5.437
2 C -0.217 4.217
3 Si 0.849 3.151
4 H -0.162 1.162
5 H -0.190 1.190
6 H -0.190 1.190
7 C -0.480 4.480
8 H 0.163 0.837
9 N 0.061 4.939
10 C -0.262 4.262
11 C -0.233 4.233
12 C 0.109 3.891
13 O -0.389 6.389
14 N -0.216 5.216
15 N -0.126 5.126
16 H 0.099 0.901
17 H 0.202 0.798
18 H 0.083 0.917
19 H 0.083 0.917
20 H 0.254 0.746
Dipole moment (debyes) X Y Z Total
from point charges 4.913 -2.080 -0.026 5.335
hybrid contribution 0.908 -0.367 -0.004 0.980
sum 5.821 -2.447 -0.030 6.315
Atomic orbital electron populations
1.70297 1.08830 1.30646 1.33945 1.27164 0.96583 1.04900 0.93046
0.84367 0.78947 0.73025 0.78799 1.16173 1.19022 1.19039 1.21082
0.93698 0.80820 1.52442 0.83662 1.47104 1.06667 1.06148 1.33936
1.22885 1.00896 0.83848 1.18573 1.21522 0.88865 0.97865 1.15029
1.19694 0.82652 0.86110 1.00646 1.86379 1.24260 1.30457 1.97807
1.73887 1.26375 1.00863 1.20518 1.82454 0.90463 1.07476 1.32225
0.90071 0.79808 0.91690 0.91692 0.74647
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.81 -45.73 11.89 21.66 0.26 -45.47 14
2 C 0.00 -0.11 5.50 84.96 0.47 0.35 14
3 Si 1.03 36.96 29.55 68.60 2.03 38.99 14
4 H -0.24 -7.70 7.11 99.48 0.71 -6.99 14
5 H -0.27 -9.22 7.11 99.48 0.71 -8.52 14
6 H -0.27 -9.23 7.11 99.48 0.71 -8.53 14
7 C -0.34 -18.44 10.31 83.98 0.87 -17.58 14
8 H 0.15 6.76 7.83 -2.91 -0.02 6.74 14
9 N -0.17 -9.71 3.78 -190.21 -0.72 -10.43 14
10 C -0.11 -5.61 10.87 83.18 0.90 -4.70 14
11 C -0.08 -4.24 7.08 41.56 0.29 -3.94 14
12 C 0.19 6.69 7.67 71.24 0.55 7.23 14
13 O -0.58 -17.58 12.90 -148.98 -1.92 -19.51 14
14 N -0.36 -20.72 12.33 -48.99 -0.60 -21.32 14
15 N -0.15 -9.49 11.73 37.02 0.43 -9.06 14
16 H 0.29 14.62 8.31 -92.71 -0.77 13.85 14
17 H 0.18 8.25 7.83 -2.91 -0.02 8.22 14
18 H 0.07 2.07 8.14 -2.39 -0.02 2.05 14
19 H 0.07 2.07 8.14 -2.39 -0.02 2.05 14
20 H 0.40 6.75 9.12 -74.06 -0.68 6.08 14
Total: -1.00 -73.62 194.30 3.14 -70.48
By element:
Atomic # 1 Polarization: 14.37 SS G_CDS: 0.59 Total: 14.96 kcal
Atomic # 6 Polarization: -21.72 SS G_CDS: 3.08 Total: -18.64 kcal
Atomic # 7 Polarization: -85.65 SS G_CDS: -0.63 Total: -86.28 kcal
Atomic # 8 Polarization: -17.58 SS G_CDS: -1.92 Total: -19.51 kcal
Atomic # 14 Polarization: 36.96 SS G_CDS: 2.03 Total: 38.99 kcal
Total: -73.62 3.14 -70.48 kcal
The number of atoms in the molecule is 20
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000062296074.mol2 20
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 81.423 kcal
(2) G-P(sol) polarization free energy of solvation -73.621 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.802 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.143 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.478 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.945 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.10 seconds