Wall clock time and date at job start Mon Mar 30 2020 01:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.01610 * 2 1 4 4 C 1.51866 * 109.99535 * 121.32650 * 2 1 3 5 5 O 1.20755 * 127.60244 * 323.55492 * 4 2 1 6 6 C 1.52489 * 104.79029 * 143.57718 * 4 2 1 7 7 C 1.54899 * 102.94076 * 321.58754 * 6 4 2 8 8 C 1.53911 * 109.99768 * 238.67874 * 2 1 3 9 9 H 1.08993 * 110.13861 * 121.06333 * 8 2 1 10 10 C 1.50699 * 110.13550 * 359.35273 * 8 2 1 11 11 H 1.08002 * 120.00587 * 0.02562 * 10 8 2 12 12 C 1.37887 * 120.00139 * 180.02562 * 10 8 2 13 13 N 1.31514 * 119.99187 * 0.02562 * 12 10 8 14 14 Si 1.86796 * 120.00334 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47150 * 59.99662 * 14 12 10 16 16 H 1.48492 * 109.47007 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46951 * 300.00164 * 14 12 10 18 18 H 1.08998 * 109.47268 * 300.12678 * 1 2 3 19 19 H 1.08998 * 109.47346 * 60.13292 * 1 2 3 20 20 H 1.09009 * 109.47182 * 180.12953 * 1 2 3 21 21 H 1.09010 * 110.71528 * 79.94409 * 6 4 2 22 22 H 1.08997 * 110.72345 * 203.21902 * 6 4 2 23 23 H 1.08996 * 110.57766 * 156.30519 * 7 6 4 24 24 H 1.09001 * 110.57540 * 279.04696 * 7 6 4 25 25 H 0.97010 * 119.99242 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0493 -0.7420 1.2191 5 8 1.5781 -0.7533 2.3308 6 6 3.2973 -1.4690 0.7299 7 6 2.8951 -1.9293 -0.6934 8 6 2.0564 -0.7518 -1.2355 9 1 2.6809 -0.0925 -1.8382 10 6 0.9043 -1.2704 -2.0570 11 1 -0.1115 -1.0873 -1.7389 12 6 1.1469 -1.9788 -3.2149 13 7 2.3837 -2.2022 -3.6020 14 14 -0.2812 -2.6210 -4.2335 15 1 -1.1229 -1.4817 -4.6796 16 1 0.2429 -3.3442 -5.4198 17 1 -1.0988 -3.5480 -3.4105 18 1 -0.3634 0.5158 0.8888 19 1 -0.3634 0.5117 -0.8911 20 1 -0.3634 -1.0277 0.0023 21 1 4.1485 -0.7893 0.6892 22 1 3.5176 -2.3271 1.3649 23 1 3.7802 -2.0850 -1.3101 24 1 2.2968 -2.8393 -0.6469 25 1 2.5544 -2.7002 -4.4168 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075525579.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:16 Heat of formation + Delta-G solvation = -51.090710 kcal Electronic energy + Delta-G solvation = -9775.332036 eV Core-core repulsion = 7946.435236 eV Total energy + Delta-G solvation = -1828.896801 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.05900 -35.83747 -32.16635 -30.72975 -26.95176 -24.02934 -23.49988 -19.59099 -18.28205 -16.04393 -15.29523 -14.63715 -14.49798 -14.09038 -12.84773 -12.73581 -12.04093 -11.72815 -11.44967 -10.99755 -10.86441 -10.61740 -10.54934 -9.94474 -9.76406 -9.38412 -8.67028 -8.56554 -8.35428 -6.05173 -4.07264 2.65132 3.30387 3.35455 3.38044 4.41467 4.98061 5.26376 5.51654 5.84396 5.97312 6.04622 6.29345 6.30361 6.49324 6.71325 6.85333 6.98931 7.09264 7.16465 7.57006 7.75272 7.94270 8.23501 8.37498 8.94192 9.57795 11.04811 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.066375 B = 0.016729 C = 0.014536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.741929 B = 1673.373997 C = 1925.794255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.149 4.149 3 H 0.083 0.917 4 C 0.375 3.625 5 O -0.470 6.470 6 C -0.191 4.191 7 C -0.089 4.089 8 C 0.053 3.947 9 H 0.038 0.962 10 C -0.526 4.526 11 H 0.074 0.926 12 C 0.063 3.937 13 N -0.890 5.890 14 Si 0.889 3.111 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.277 1.277 18 H 0.030 0.970 19 H 0.065 0.935 20 H 0.061 0.939 21 H 0.091 0.909 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.059 0.941 25 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.292 1.817 3.420 3.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.168 4.168 3 H 0.101 0.899 4 C 0.253 3.747 5 O -0.345 6.345 6 C -0.229 4.229 7 C -0.128 4.128 8 C 0.035 3.965 9 H 0.056 0.944 10 C -0.563 4.563 11 H 0.092 0.908 12 C -0.139 4.139 13 N -0.529 5.529 14 Si 0.717 3.283 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.203 1.203 18 H 0.049 0.951 19 H 0.083 0.917 20 H 0.080 0.920 21 H 0.109 0.891 22 H 0.088 0.912 23 H 0.087 0.913 24 H 0.078 0.922 25 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.148 1.720 3.842 4.212 hybrid contribution -0.578 -0.452 -0.787 1.076 sum -0.430 1.269 3.055 3.336 Atomic orbital electron populations 1.21630 0.94151 1.02042 0.99752 1.22427 0.97846 0.99879 0.96625 0.89860 1.25611 0.84947 0.76722 0.87436 1.90283 1.62704 1.57430 1.24120 1.23235 0.97587 1.00773 1.01307 1.22309 1.00462 1.00088 0.89912 1.19234 0.95160 0.92304 0.89810 0.94412 1.21559 0.93295 1.34507 1.06969 0.90838 1.25012 0.95412 0.96076 0.97431 1.69961 1.18562 1.40545 1.23796 0.86708 0.82756 0.79120 0.79743 1.20262 1.21376 1.20297 0.95137 0.91652 0.92017 0.89089 0.91241 0.91338 0.92235 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 7.56 37.16 0.28 -2.09 15 2 C -0.15 -3.04 3.42 -90.72 -0.31 -3.35 15 3 H 0.08 1.54 8.14 -51.93 -0.42 1.12 15 4 C 0.38 7.62 7.34 -27.57 -0.20 7.42 15 5 O -0.47 -10.37 17.81 6.00 0.11 -10.26 15 6 C -0.19 -3.54 6.80 -25.99 -0.18 -3.72 15 7 C -0.09 -1.98 5.50 -25.00 -0.14 -2.11 15 8 C 0.05 1.25 2.84 -90.57 -0.26 1.00 15 9 H 0.04 0.94 8.14 -51.93 -0.42 0.52 15 10 C -0.53 -13.59 7.50 -34.44 -0.26 -13.85 15 11 H 0.07 1.85 4.67 -52.49 -0.25 1.60 15 12 C 0.06 1.67 5.33 -17.82 -0.10 1.57 15 13 N -0.89 -24.61 12.50 55.43 0.69 -23.91 15 14 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 15 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 16 H -0.29 -6.72 7.11 56.52 0.40 -6.32 15 17 H -0.28 -6.45 7.11 56.52 0.40 -6.04 15 18 H 0.03 0.55 8.14 -51.93 -0.42 0.13 15 19 H 0.06 1.29 7.23 -51.93 -0.38 0.91 15 20 H 0.06 1.31 6.99 -51.92 -0.36 0.94 15 21 H 0.09 1.48 8.14 -51.92 -0.42 1.06 15 22 H 0.07 1.20 8.14 -51.93 -0.42 0.78 15 23 H 0.07 1.56 8.03 -51.93 -0.42 1.15 15 24 H 0.06 1.41 7.86 -51.93 -0.41 1.00 15 25 H 0.26 6.93 8.31 -40.82 -0.34 6.60 15 LS Contribution 211.25 15.07 3.18 3.18 Total: -1.00 -27.71 211.25 -5.25 -32.96 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: -3.06 Total: -2.55 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -1.16 Total: -15.14 kcal Atomic # 7 Polarization: -24.61 SS G_CDS: 0.69 Total: -23.91 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.11 Total: -10.26 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 3.18 Total: 3.18 kcal Total: -27.71 -5.25 -32.96 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075525579.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.126 kcal (2) G-P(sol) polarization free energy of solvation -27.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds