Wall clock time and date at job start Mon Mar 30 2020 01:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.01610 * 2 1 4 4 C 1.51866 * 109.99535 * 121.32650 * 2 1 3 5 5 O 1.20755 * 127.60244 * 323.55492 * 4 2 1 6 6 C 1.52489 * 104.79029 * 143.57718 * 4 2 1 7 7 C 1.54899 * 102.94076 * 321.58754 * 6 4 2 8 8 C 1.53911 * 109.99768 * 238.67874 * 2 1 3 9 9 H 1.08993 * 110.13861 * 121.06333 * 8 2 1 10 10 C 1.50699 * 110.13550 * 359.35273 * 8 2 1 11 11 H 1.08002 * 120.00587 * 0.02562 * 10 8 2 12 12 C 1.37887 * 120.00139 * 180.02562 * 10 8 2 13 13 N 1.31514 * 119.99187 * 0.02562 * 12 10 8 14 14 Si 1.86796 * 120.00334 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47150 * 59.99662 * 14 12 10 16 16 H 1.48492 * 109.47007 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46951 * 300.00164 * 14 12 10 18 18 H 1.08998 * 109.47268 * 300.12678 * 1 2 3 19 19 H 1.08998 * 109.47346 * 60.13292 * 1 2 3 20 20 H 1.09009 * 109.47182 * 180.12953 * 1 2 3 21 21 H 1.09010 * 110.71528 * 79.94409 * 6 4 2 22 22 H 1.08997 * 110.72345 * 203.21902 * 6 4 2 23 23 H 1.08996 * 110.57766 * 156.30519 * 7 6 4 24 24 H 1.09001 * 110.57540 * 279.04696 * 7 6 4 25 25 H 0.97010 * 119.99242 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0493 -0.7420 1.2191 5 8 1.5781 -0.7533 2.3308 6 6 3.2973 -1.4690 0.7299 7 6 2.8951 -1.9293 -0.6934 8 6 2.0564 -0.7518 -1.2355 9 1 2.6809 -0.0925 -1.8382 10 6 0.9043 -1.2704 -2.0570 11 1 -0.1115 -1.0873 -1.7389 12 6 1.1469 -1.9788 -3.2149 13 7 2.3837 -2.2022 -3.6020 14 14 -0.2812 -2.6210 -4.2335 15 1 -1.1229 -1.4817 -4.6796 16 1 0.2429 -3.3442 -5.4198 17 1 -1.0988 -3.5480 -3.4105 18 1 -0.3634 0.5158 0.8888 19 1 -0.3634 0.5117 -0.8911 20 1 -0.3634 -1.0277 0.0023 21 1 4.1485 -0.7893 0.6892 22 1 3.5176 -2.3271 1.3649 23 1 3.7802 -2.0850 -1.3101 24 1 2.2968 -2.8393 -0.6469 25 1 2.5544 -2.7002 -4.4168 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075525579.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:16 Heat of formation + Delta-G solvation = -66.976529 kcal Electronic energy + Delta-G solvation = -9776.020897 eV Core-core repulsion = 7946.435236 eV Total energy + Delta-G solvation = -1829.585661 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.72896 -37.58897 -34.13735 -32.36833 -28.81045 -25.76422 -25.30208 -21.35394 -19.97239 -17.96757 -17.00667 -16.44601 -16.21554 -15.74054 -14.66818 -14.48543 -13.75079 -13.48124 -13.16015 -12.82548 -12.64962 -12.33802 -12.24252 -11.77658 -11.56134 -11.13753 -10.57593 -10.46907 -10.11263 -8.07762 -6.13973 1.04142 1.45230 1.46331 1.52562 2.47441 3.24643 3.37901 3.88873 4.19957 4.37741 4.49839 4.66070 4.74308 4.93224 5.05112 5.16952 5.23325 5.37335 5.47254 5.71053 5.85883 5.96465 6.41220 6.62332 6.94647 7.53497 9.01506 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.066375 B = 0.016729 C = 0.014536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.741929 B = 1673.373997 C = 1925.794255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.148 4.148 3 H 0.107 0.893 4 C 0.380 3.620 5 O -0.487 6.487 6 C -0.176 4.176 7 C -0.083 4.083 8 C 0.046 3.954 9 H 0.018 0.982 10 C -0.536 4.536 11 H 0.078 0.922 12 C 0.014 3.986 13 N -0.919 5.919 14 Si 0.944 3.056 15 H -0.271 1.271 16 H -0.289 1.289 17 H -0.275 1.275 18 H 0.048 0.952 19 H 0.064 0.936 20 H 0.044 0.956 21 H 0.121 0.879 22 H 0.087 0.913 23 H 0.055 0.945 24 H 0.036 0.964 25 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.063 2.176 4.031 4.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.166 4.166 3 H 0.125 0.875 4 C 0.258 3.742 5 O -0.363 6.363 6 C -0.213 4.213 7 C -0.122 4.122 8 C 0.028 3.972 9 H 0.037 0.963 10 C -0.574 4.574 11 H 0.095 0.905 12 C -0.184 4.184 13 N -0.558 5.558 14 Si 0.770 3.230 15 H -0.196 1.196 16 H -0.215 1.215 17 H -0.201 1.201 18 H 0.066 0.934 19 H 0.083 0.917 20 H 0.063 0.937 21 H 0.139 0.861 22 H 0.105 0.895 23 H 0.074 0.926 24 H 0.054 0.946 25 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.088 2.085 4.457 4.921 hybrid contribution -0.505 -0.538 -0.973 1.221 sum -0.593 1.548 3.483 3.858 Atomic orbital electron populations 1.21558 0.93860 1.01168 1.00602 1.22394 0.98111 1.00813 0.95326 0.87532 1.25648 0.85189 0.76397 0.86949 1.90288 1.63209 1.58112 1.24675 1.23144 0.97721 1.01807 0.98668 1.22072 0.99310 0.98663 0.92138 1.19209 0.94543 0.92736 0.90751 0.96343 1.21984 0.94330 1.33891 1.07198 0.90459 1.25693 0.97391 0.96656 0.98697 1.70069 1.20079 1.41499 1.24173 0.85826 0.80220 0.78626 0.78283 1.19628 1.21461 1.20074 0.93352 0.91705 0.93726 0.86133 0.89485 0.92613 0.94550 0.93263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.39 7.56 71.98 0.54 -3.85 15 2 C -0.15 -5.74 3.42 -10.86 -0.04 -5.78 15 3 H 0.11 3.66 8.14 -2.39 -0.02 3.64 15 4 C 0.38 14.49 7.34 30.05 0.22 14.71 15 5 O -0.49 -20.27 17.81 -1.43 -0.03 -20.30 15 6 C -0.18 -6.06 6.80 31.07 0.21 -5.85 15 7 C -0.08 -3.63 5.50 31.72 0.17 -3.46 15 8 C 0.05 2.14 2.84 -10.76 -0.03 2.10 15 9 H 0.02 0.92 8.14 -2.39 -0.02 0.90 15 10 C -0.54 -27.55 7.50 25.60 0.19 -27.36 15 11 H 0.08 3.84 4.67 -2.91 -0.01 3.82 15 12 C 0.01 0.77 5.33 84.66 0.45 1.22 15 13 N -0.92 -51.09 12.50 21.45 0.27 -50.82 15 14 Si 0.94 42.35 29.54 68.60 2.03 44.38 15 15 H -0.27 -11.81 7.11 99.48 0.71 -11.10 15 16 H -0.29 -12.91 7.11 99.48 0.71 -12.20 15 17 H -0.28 -12.16 7.11 99.48 0.71 -11.46 15 18 H 0.05 1.66 8.14 -2.39 -0.02 1.64 15 19 H 0.06 2.45 7.23 -2.39 -0.02 2.44 15 20 H 0.04 1.83 6.99 -2.38 -0.02 1.81 15 21 H 0.12 3.50 8.14 -2.38 -0.02 3.48 15 22 H 0.09 2.74 8.14 -2.39 -0.02 2.72 15 23 H 0.06 2.54 8.03 -2.39 -0.02 2.52 15 24 H 0.04 1.71 7.86 -2.39 -0.02 1.69 15 25 H 0.26 13.88 8.31 -92.70 -0.77 13.10 15 Total: -1.00 -57.15 211.25 5.16 -51.99 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: 1.17 Total: 3.01 kcal Atomic # 6 Polarization: -29.99 SS G_CDS: 1.73 Total: -28.27 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 0.27 Total: -50.82 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.03 Total: -20.30 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -57.15 5.16 -51.99 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075525579.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.985 kcal (2) G-P(sol) polarization free energy of solvation -57.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds