Wall clock time and date at job start Mon Mar 30 2020 01:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.73599 * 305.70348 * 10 9 7 12 12 C 1.54979 * 110.83094 * 182.26810 * 10 9 7 13 13 C 1.54509 * 103.64225 * 204.86816 * 12 10 9 14 14 C 1.51446 * 106.94234 * 22.83173 * 13 12 10 15 15 O 1.20763 * 126.33984 * 180.54698 * 14 13 12 16 16 C 1.51846 * 107.31827 * 0.53192 * 14 13 12 17 17 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 18 18 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 19 19 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 20 20 H 1.09004 * 110.57017 * 323.26676 * 12 10 9 21 21 H 1.08998 * 110.57264 * 86.14175 * 12 10 9 22 22 H 1.09008 * 109.79391 * 263.53691 * 13 12 10 23 23 H 1.09001 * 110.11771 * 142.31206 * 13 12 10 24 24 H 1.08994 * 110.43834 * 217.46854 * 16 14 13 25 25 H 1.09005 * 110.54452 * 94.99935 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 1 2.9483 -3.5688 -0.8273 12 6 1.5034 -5.0215 -0.0568 13 6 2.5053 -6.0106 0.5798 14 6 3.4366 -5.1951 1.4523 15 8 4.3595 -5.6191 2.1056 16 6 2.9952 -3.7456 1.3532 17 1 -0.4850 -0.8401 -0.0004 18 1 0.6241 -2.5566 0.8903 19 1 0.6247 -2.5571 -0.8897 20 1 0.5840 -4.9810 0.5274 21 1 1.2904 -5.2984 -1.0893 22 1 3.0735 -6.5149 -0.2019 23 1 1.9739 -6.7443 1.1860 24 1 3.8610 -3.0835 1.3501 25 1 2.3262 -3.4923 2.1757 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075525634.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:37 Heat of formation + Delta-G solvation = -87.622251 kcal Electronic energy + Delta-G solvation = -9410.256325 eV Core-core repulsion = 7579.775398 eV Total energy + Delta-G solvation = -1830.480927 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.73035 -37.82834 -35.17052 -31.35647 -29.05672 -26.86395 -24.26624 -21.14365 -20.39117 -18.87748 -17.14875 -16.67423 -15.76055 -15.62250 -14.92875 -14.83084 -14.27843 -13.98258 -13.19393 -12.90159 -12.55960 -12.25143 -12.00980 -11.91194 -11.66964 -11.40334 -10.55648 -10.54054 -10.43110 -8.63599 -6.33608 0.87858 1.53729 1.61055 1.80091 2.58212 3.18767 3.23580 3.60240 3.88429 4.05933 4.33937 4.46662 4.59980 4.77417 4.88391 4.98564 5.05070 5.15678 5.22310 5.39849 5.60395 6.05835 6.24140 6.44881 6.64539 7.46628 8.77545 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.075039 B = 0.012001 C = 0.010759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.051715 B = 2332.631626 C = 2601.773323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.040 4.040 3 Si 1.112 2.888 4 H -0.285 1.285 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.611 4.611 8 H 0.049 0.951 9 C 0.018 3.982 10 C -0.073 4.073 11 H 0.068 0.932 12 C -0.112 4.112 13 C -0.167 4.167 14 C 0.375 3.625 15 O -0.492 6.492 16 C -0.168 4.168 17 H 0.257 0.743 18 H -0.005 1.005 19 H -0.006 1.006 20 H 0.071 0.929 21 H 0.088 0.912 22 H 0.117 0.883 23 H 0.119 0.881 24 H 0.074 0.926 25 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.593 -8.621 -0.224 9.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.237 4.237 3 Si 0.934 3.066 4 H -0.211 1.211 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.649 4.649 8 H 0.067 0.933 9 C -0.019 4.019 10 C -0.091 4.091 11 H 0.087 0.913 12 C -0.149 4.149 13 C -0.204 4.204 14 C 0.254 3.746 15 O -0.369 6.369 16 C -0.206 4.206 17 H 0.066 0.934 18 H 0.013 0.987 19 H 0.013 0.987 20 H 0.090 0.910 21 H 0.107 0.893 22 H 0.135 0.865 23 H 0.137 0.863 24 H 0.093 0.907 25 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.883 -7.221 0.111 8.200 hybrid contribution -0.100 -1.357 0.029 1.361 sum 3.783 -8.578 0.140 9.376 Atomic orbital electron populations 1.70921 1.07929 1.29942 1.49152 1.27277 0.96636 1.06664 0.93129 0.82991 0.74175 0.71585 0.77875 1.21064 1.19738 1.19525 1.22492 0.94603 0.93479 1.54346 0.93281 1.19162 0.94518 0.93651 0.94567 1.21878 0.97033 0.94943 0.95260 0.91317 1.22438 0.97690 0.92741 1.02073 1.22623 0.97955 0.99269 1.00576 1.25425 0.80636 0.92645 0.75912 1.90355 1.28582 1.79688 1.38290 1.22831 1.01788 0.95687 1.00256 0.93370 0.98693 0.98726 0.91013 0.89327 0.86523 0.86349 0.90734 0.88675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.71 13.65 21.45 0.29 -57.42 15 2 C -0.04 -2.27 5.46 84.65 0.46 -1.81 15 3 Si 1.11 50.05 29.90 68.60 2.05 52.10 15 4 H -0.29 -12.88 7.11 99.48 0.71 -12.18 15 5 H -0.27 -11.45 7.11 99.48 0.71 -10.75 15 6 H -0.27 -11.28 7.11 99.48 0.71 -10.58 15 7 C -0.61 -33.83 8.75 25.60 0.22 -33.61 15 8 H 0.05 2.66 7.74 -2.91 -0.02 2.63 15 9 C 0.02 0.88 3.79 29.85 0.11 0.99 15 10 C -0.07 -2.71 2.86 -9.47 -0.03 -2.74 15 11 H 0.07 2.58 8.14 -2.39 -0.02 2.56 15 12 C -0.11 -3.10 6.35 31.78 0.20 -2.89 15 13 C -0.17 -3.93 6.70 30.60 0.20 -3.73 15 14 C 0.37 11.85 7.88 29.71 0.23 12.08 15 15 O -0.49 -18.22 17.99 -1.46 -0.03 -18.25 15 16 C -0.17 -6.04 5.82 30.86 0.18 -5.86 15 17 H 0.26 15.78 7.22 -92.71 -0.67 15.11 15 18 H -0.01 -0.27 7.91 -2.39 -0.02 -0.29 15 19 H -0.01 -0.29 8.01 -2.38 -0.02 -0.31 15 20 H 0.07 1.98 8.04 -2.38 -0.02 1.96 15 21 H 0.09 2.15 8.14 -2.39 -0.02 2.13 15 22 H 0.12 2.29 8.14 -2.38 -0.02 2.27 15 23 H 0.12 2.26 8.14 -2.39 -0.02 2.24 15 24 H 0.07 2.86 8.14 -2.39 -0.02 2.84 15 25 H 0.10 3.53 7.97 -2.38 -0.02 3.51 15 Total: -1.00 -65.13 218.08 5.17 -59.97 By element: Atomic # 1 Polarization: -0.09 SS G_CDS: 1.26 Total: 1.17 kcal Atomic # 6 Polarization: -39.16 SS G_CDS: 1.59 Total: -37.57 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: 0.29 Total: -57.42 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.03 Total: -18.25 kcal Atomic # 14 Polarization: 50.05 SS G_CDS: 2.05 Total: 52.10 kcal Total: -65.13 5.17 -59.97 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075525634.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.657 kcal (2) G-P(sol) polarization free energy of solvation -65.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds