Wall clock time and date at job start Mon Mar 30 2020 02:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47471 * 2 1 4 4 C 1.50697 * 109.47406 * 239.99699 * 2 1 3 5 5 H 1.07997 * 120.00049 * 268.26832 * 4 2 1 6 6 C 1.37875 * 120.00211 * 88.26472 * 4 2 1 7 7 N 1.31516 * 119.99867 * 353.43840 * 6 4 2 8 8 Si 1.86800 * 120.00269 * 173.43687 * 6 4 2 9 9 H 1.48498 * 109.46905 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46972 * 120.00427 * 8 6 4 11 11 H 1.48506 * 109.46816 * 240.00107 * 8 6 4 12 12 C 1.53002 * 109.47226 * 119.99677 * 2 1 3 13 13 C 1.54266 * 110.03274 * 297.16823 * 12 2 1 14 14 C 1.54889 * 104.19476 * 217.10215 * 13 12 2 15 15 C 1.54888 * 102.74729 * 37.94586 * 14 13 12 16 16 C 1.53874 * 110.03480 * 179.97438 * 12 2 1 17 17 H 1.08996 * 109.46857 * 186.52726 * 1 2 3 18 18 H 1.08993 * 109.46984 * 306.52728 * 1 2 3 19 19 H 1.08997 * 109.46874 * 66.53154 * 1 2 3 20 20 H 0.97007 * 120.00039 * 354.91866 * 7 6 4 21 21 H 1.09004 * 110.01572 * 58.61030 * 12 2 1 22 22 H 1.09005 * 110.48619 * 335.78206 * 13 12 2 23 23 H 1.09003 * 110.48758 * 98.42416 * 13 12 2 24 24 H 1.08989 * 110.76092 * 279.62434 * 14 13 12 25 25 H 1.09012 * 110.91198 * 156.32825 * 14 13 12 26 26 H 1.09008 * 110.48189 * 203.37672 * 15 14 13 27 27 H 1.08992 * 110.60319 * 80.79262 * 15 14 13 28 28 H 1.08997 * 110.03768 * 238.57069 * 16 12 2 29 29 H 1.09007 * 110.03173 * 359.95300 * 16 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.2391 -1.7699 -1.1956 6 6 2.2281 -0.0080 -2.4005 7 7 1.8560 1.2508 -2.4818 8 14 3.0219 -0.8440 -3.8703 9 1 3.3457 -2.2513 -3.5239 10 1 2.0822 -0.8212 -5.0199 11 1 4.2685 -0.1242 -4.2356 12 6 2.0400 -0.7212 1.2493 13 6 1.5923 0.0361 2.5165 14 6 2.7935 -0.1001 3.4847 15 6 4.0122 0.0243 2.5370 16 6 3.5787 -0.7293 1.2620 17 1 -0.3633 -1.0210 0.1168 18 1 -0.3633 0.6116 0.8258 19 1 -0.3633 0.4093 -0.9426 20 1 1.3778 1.6638 -1.7457 21 1 1.6615 -1.7431 1.2708 22 1 1.4039 1.0851 2.2875 23 1 0.7032 -0.4276 2.9439 24 1 2.7846 -1.0725 3.9770 25 1 2.7930 0.7039 4.2209 26 1 4.8893 -0.4481 2.9795 27 1 4.2170 1.0707 2.3109 28 1 3.9465 -1.7549 1.2909 29 1 3.9621 -0.2201 0.3777 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084327417.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:35 Heat of formation + Delta-G solvation = -56.514314 kcal Electronic energy + Delta-G solvation = -9998.506366 eV Core-core repulsion = 8305.207475 eV Total energy + Delta-G solvation = -1693.298891 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.46981 -35.81472 -32.65071 -29.60814 -28.21133 -26.62397 -22.97690 -21.37170 -20.41447 -18.65315 -16.53418 -16.18765 -15.63989 -15.06107 -14.34927 -14.13580 -13.60481 -13.23062 -12.95366 -12.58730 -12.24757 -11.95300 -11.84817 -11.81254 -11.63304 -11.43820 -11.31573 -10.85346 -10.50185 -10.28447 -8.54683 -6.23119 1.51580 1.60274 1.76244 2.59072 3.24547 3.87688 3.91720 3.97166 4.45328 4.63510 4.70172 4.75764 4.82563 4.87099 4.88230 5.02131 5.04805 5.12470 5.23655 5.25692 5.46182 5.51744 5.54957 5.63324 5.90106 6.20138 6.31721 6.73905 7.54884 8.84380 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.060829 B = 0.015183 C = 0.013419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.198181 B = 1843.722140 C = 2086.022937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.025 3.975 3 H 0.000 1.000 4 C -0.588 4.588 5 H 0.039 0.961 6 C -0.036 4.036 7 N -0.945 5.945 8 Si 1.111 2.889 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.281 1.281 12 C -0.076 4.076 13 C -0.118 4.118 14 C -0.114 4.114 15 C -0.121 4.121 16 C -0.111 4.111 17 H 0.040 0.960 18 H 0.042 0.958 19 H 0.015 0.985 20 H 0.258 0.742 21 H 0.047 0.953 22 H 0.049 0.951 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.065 -3.463 8.989 9.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.006 3.994 3 H 0.018 0.982 4 C -0.626 4.626 5 H 0.057 0.943 6 C -0.233 4.233 7 N -0.583 5.583 8 Si 0.934 3.066 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.207 1.207 12 C -0.094 4.094 13 C -0.156 4.156 14 C -0.151 4.151 15 C -0.159 4.159 16 C -0.148 4.148 17 H 0.060 0.940 18 H 0.061 0.939 19 H 0.035 0.965 20 H 0.068 0.932 21 H 0.066 0.934 22 H 0.068 0.932 23 H 0.087 0.913 24 H 0.095 0.905 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.607 -3.213 7.457 8.528 hybrid contribution -0.777 -0.058 1.118 1.362 sum 1.830 -3.271 8.574 9.358 Atomic orbital electron populations 1.21793 0.98912 0.99385 0.98217 1.19010 0.92105 0.94632 0.93632 0.98183 1.22287 1.46670 0.96249 0.97406 0.94266 1.27104 0.96663 0.95862 1.03711 1.70836 1.38790 1.13551 1.35106 0.83015 0.76045 0.74803 0.72734 1.19808 1.20920 1.20658 1.21688 0.95288 0.97982 0.94477 1.22444 0.98529 0.99460 0.95143 1.22463 0.93574 1.02307 0.96805 1.22378 0.98610 0.99688 0.95222 1.22053 0.95654 0.99570 0.97571 0.94038 0.93877 0.96528 0.93175 0.93417 0.93231 0.91348 0.90505 0.90372 0.90345 0.92931 0.92690 0.94282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.89 8.74 71.98 0.63 -5.26 15 2 C 0.02 1.26 1.23 -11.54 -0.01 1.25 15 3 H 0.00 0.00 6.95 -2.39 -0.02 -0.02 15 4 C -0.59 -33.34 7.17 25.60 0.18 -33.16 15 5 H 0.04 2.23 7.82 -2.91 -0.02 2.21 15 6 C -0.04 -2.11 5.45 84.65 0.46 -1.65 15 7 N -0.94 -58.88 13.56 21.45 0.29 -58.59 15 8 Si 1.11 51.72 29.91 68.60 2.05 53.77 15 9 H -0.27 -11.83 7.11 99.48 0.71 -11.12 15 10 H -0.28 -12.81 7.11 99.48 0.71 -12.11 15 11 H -0.28 -12.69 7.11 99.48 0.71 -11.99 15 12 C -0.08 -3.16 2.49 -10.07 -0.03 -3.19 15 13 C -0.12 -4.01 5.44 31.67 0.17 -3.83 15 14 C -0.11 -3.15 6.91 31.88 0.22 -2.93 15 15 C -0.12 -3.79 6.83 31.69 0.22 -3.58 15 16 C -0.11 -4.40 6.03 31.34 0.19 -4.21 15 17 H 0.04 1.83 8.14 -2.39 -0.02 1.81 15 18 H 0.04 1.76 7.49 -2.39 -0.02 1.74 15 19 H 0.02 0.82 7.80 -2.39 -0.02 0.80 15 20 H 0.26 16.25 6.46 -92.70 -0.60 15.65 15 21 H 0.05 2.00 8.14 -2.38 -0.02 1.98 15 22 H 0.05 1.78 7.75 -2.38 -0.02 1.76 15 23 H 0.07 2.09 8.14 -2.39 -0.02 2.07 15 24 H 0.08 1.88 8.14 -2.39 -0.02 1.86 15 25 H 0.08 1.84 8.14 -2.38 -0.02 1.82 15 26 H 0.08 2.05 8.14 -2.38 -0.02 2.03 15 27 H 0.05 1.70 8.14 -2.39 -0.02 1.68 15 28 H 0.05 2.04 8.14 -2.39 -0.02 2.02 15 29 H 0.04 1.82 7.10 -2.38 -0.02 1.80 15 Total: -1.00 -63.01 231.58 5.63 -57.38 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: 1.26 Total: 3.99 kcal Atomic # 6 Polarization: -58.58 SS G_CDS: 2.03 Total: -56.55 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: 0.29 Total: -58.59 kcal Atomic # 14 Polarization: 51.72 SS G_CDS: 2.05 Total: 53.77 kcal Total: -63.01 5.63 -57.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084327417.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.867 kcal (2) G-P(sol) polarization free energy of solvation -63.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds