Wall clock time and date at job start Mon Mar 30 2020 02:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 N 1.40594 * 127.38045 * 269.67824 * 10 9 7 12 12 N 1.28909 * 106.81693 * 179.83110 * 11 10 9 13 13 N 1.28425 * 110.31407 * 0.44903 * 12 11 10 14 14 C 1.31478 * 110.50939 * 359.70681 * 13 12 11 15 15 N 1.38372 * 126.43853 * 179.97438 * 14 13 12 16 16 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 17 17 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 18 18 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 19 19 H 0.97006 * 120.00242 * 179.97438 * 15 14 13 20 20 H 0.97008 * 120.00200 * 0.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 7 2.7528 -4.2605 -1.1302 12 7 3.5418 -5.1759 -0.6815 13 7 3.5381 -5.1774 0.6027 14 6 2.7366 -4.2419 1.0622 15 7 2.4856 -3.9551 2.3924 16 1 -0.4850 0.8401 -0.0004 17 1 0.6242 -2.5609 0.8844 18 1 0.6244 -2.5529 -0.8956 19 1 1.8739 -3.2398 2.6273 20 1 2.9220 -4.4687 3.0900 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104569735.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:48 Heat of formation + Delta-G solvation = 88.114552 kcal Electronic energy + Delta-G solvation = -9386.771588 eV Core-core repulsion = 7427.237677 eV Total energy + Delta-G solvation = -1959.533911 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 169.066 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -43.62682 -36.97079 -35.69141 -34.28680 -31.44400 -29.75555 -25.99222 -23.70776 -22.92188 -18.98944 -18.53413 -17.80880 -17.14149 -17.07927 -16.13178 -14.59046 -14.55793 -13.77349 -13.28600 -13.03799 -12.80683 -12.64614 -12.38178 -12.15076 -11.75325 -11.00589 -10.76935 -9.60137 -8.40484 -6.57124 0.42579 1.10496 1.39941 1.42575 1.50832 1.57572 2.31159 2.56646 2.93078 3.68792 4.19298 4.60819 4.76013 5.09662 5.29431 5.52440 5.69105 6.13652 6.50599 6.61608 7.15060 7.75972 8.67198 Molecular weight = 169.07amu Principal moments of inertia in cm(-1) A = 0.070997 B = 0.013892 C = 0.013530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 394.289880 B = 2015.108494 C = 2069.000891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.033 3.967 3 Si 0.970 3.030 4 H -0.279 1.279 5 H -0.274 1.274 6 H -0.265 1.265 7 C -0.563 4.563 8 H 0.051 0.949 9 C 0.267 3.733 10 N -0.390 5.390 11 N -0.128 5.128 12 N -0.056 5.056 13 N -0.405 5.405 14 C 0.490 3.510 15 N -0.788 5.788 16 H 0.276 0.724 17 H 0.068 0.932 18 H 0.041 0.959 19 H 0.426 0.574 20 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.365 -1.595 6.215 6.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.170 4.170 3 Si 0.794 3.206 4 H -0.204 1.204 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.602 4.602 8 H 0.069 0.931 9 C 0.148 3.852 10 N -0.193 5.193 11 N -0.118 5.118 12 N -0.052 5.052 13 N -0.272 5.272 14 C 0.122 3.878 15 N -0.348 5.348 16 H 0.085 0.915 17 H 0.085 0.915 18 H 0.059 0.941 19 H 0.260 0.740 20 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 1.773 -2.182 5.159 5.875 hybrid contribution -0.397 1.573 0.663 1.753 sum 1.376 -0.609 5.822 6.013 Atomic orbital electron populations 1.69962 1.07124 1.29242 1.48406 1.25624 0.95741 1.02370 0.93274 0.85425 0.78324 0.77902 0.78979 1.20411 1.19854 1.18935 1.21325 0.93197 0.90657 1.54981 0.93093 1.19581 0.85809 0.79894 0.99938 1.51717 1.36336 1.28423 1.02827 1.82363 1.13051 1.07947 1.08436 1.77642 1.11870 1.12533 1.03193 1.74501 1.25697 1.23679 1.03330 1.21693 0.90463 0.89135 0.86543 1.41006 1.53319 1.42341 0.98151 0.91462 0.91467 0.94083 0.73989 0.72755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.27 13.29 21.45 0.28 -46.99 14 2 C 0.03 1.64 5.46 84.66 0.46 2.10 14 3 Si 0.97 40.15 29.54 68.60 2.03 42.18 14 4 H -0.28 -11.77 7.11 99.48 0.71 -11.06 14 5 H -0.27 -10.88 7.11 99.48 0.71 -10.17 14 6 H -0.26 -10.53 7.11 99.48 0.71 -9.82 14 7 C -0.56 -28.82 9.39 25.60 0.24 -28.58 14 8 H 0.05 2.72 7.81 -2.91 -0.02 2.69 14 9 C 0.27 12.58 6.13 85.64 0.53 13.11 14 10 N -0.39 -17.48 3.67 -353.39 -1.30 -18.77 14 11 N -0.13 -6.11 13.93 37.02 0.52 -5.60 14 12 N -0.06 -2.55 13.38 37.02 0.50 -2.05 14 13 N -0.41 -16.86 12.20 -58.70 -0.72 -17.58 14 14 C 0.49 18.94 9.27 260.65 2.42 21.36 14 15 N -0.79 -21.27 9.06 -58.70 -0.53 -21.80 14 16 H 0.28 13.50 8.31 -92.70 -0.77 12.73 14 17 H 0.07 2.96 7.64 -2.38 -0.02 2.95 14 18 H 0.04 2.10 8.14 -2.39 -0.02 2.08 14 19 H 0.43 10.67 8.26 -92.70 -0.77 9.91 14 20 H 0.44 8.61 8.95 -92.70 -0.83 7.78 14 Total: -1.00 -59.64 195.74 4.11 -55.53 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -0.31 Total: 7.09 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 3.64 Total: 7.99 kcal Atomic # 7 Polarization: -111.54 SS G_CDS: -1.25 Total: -112.79 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.18 kcal Total: -59.64 4.11 -55.53 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104569735.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.644 kcal (2) G-P(sol) polarization free energy of solvation -59.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds