Wall clock time and date at job start Mon Mar 30 2020 02:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 299.99983 * 3 2 1 6 6 H 1.48500 * 109.47000 * 60.00075 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46637 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.21768 * 304.52272 * 10 9 7 12 12 C 1.54489 * 110.24303 * 182.50329 * 10 9 7 13 13 C 1.54627 * 101.76284 * 266.41407 * 12 10 9 14 14 C 1.51282 * 104.19790 * 335.20723 * 13 12 10 15 15 O 1.21280 * 124.94015 * 196.23258 * 14 13 12 16 16 N 1.34413 * 110.11473 * 16.24648 * 14 13 12 17 17 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 18 18 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 19 19 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 20 20 H 1.08997 * 110.96924 * 24.53272 * 12 10 9 21 21 H 1.08998 * 110.96833 * 148.29906 * 12 10 9 22 22 H 1.08999 * 110.48939 * 216.52118 * 13 12 10 23 23 H 1.09000 * 110.48227 * 93.88009 * 13 12 10 24 24 H 0.97006 * 124.34457 * 180.38952 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 1 2.9307 -3.5716 -0.8422 12 6 1.4921 -5.0094 -0.0628 13 6 1.3709 -5.3734 1.4351 14 6 2.5199 -4.6387 2.0897 15 8 2.9509 -4.8711 3.1993 16 7 2.9934 -3.6907 1.2628 17 1 -0.4850 0.8401 0.0004 18 1 0.6241 -2.5567 0.8902 19 1 0.6248 -2.5571 -0.8897 20 1 0.5081 -4.8853 -0.5149 21 1 2.0752 -5.7574 -0.6000 22 1 1.4760 -6.4491 1.5761 23 1 0.4185 -5.0265 1.8361 24 1 3.7342 -3.1009 1.4736 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104626960.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:27 Heat of formation + Delta-G solvation = -77.191715 kcal Electronic energy + Delta-G solvation = -9629.287997 eV Core-core repulsion = 7733.833460 eV Total energy + Delta-G solvation = -1895.454536 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 169.084 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.13871 -37.72129 -34.94958 -32.06826 -31.26481 -27.36754 -24.47222 -21.80305 -21.25209 -18.60369 -18.11627 -16.91852 -16.27307 -15.97210 -14.80821 -14.69531 -14.07489 -13.86412 -13.43407 -13.16841 -12.83805 -12.60811 -12.22426 -11.89996 -11.59894 -11.09859 -10.83275 -10.57520 -9.82289 -8.20194 -6.28988 1.38564 1.40973 1.51451 1.67673 2.40027 2.64949 3.15629 3.59237 3.79712 4.15907 4.38831 4.74467 4.82243 4.87055 5.12739 5.28755 5.42138 5.57412 5.77933 6.05764 6.15114 6.32301 6.86932 7.36829 7.39712 8.91266 Molecular weight = 169.08amu Principal moments of inertia in cm(-1) A = 0.068844 B = 0.013209 C = 0.012193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.618193 B = 2119.194722 C = 2295.928293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.957 3.043 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.287 1.287 7 C -0.533 4.533 8 H 0.061 0.939 9 C 0.016 3.984 10 C 0.133 3.867 11 H 0.092 0.908 12 C -0.118 4.118 13 C -0.146 4.146 14 C 0.505 3.495 15 O -0.603 6.603 16 N -0.707 5.707 17 H 0.262 0.738 18 H -0.008 1.008 19 H 0.017 0.983 20 H 0.097 0.903 21 H 0.106 0.894 22 H 0.122 0.878 23 H 0.100 0.900 24 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.893 -7.468 -2.643 8.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.782 3.218 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.213 1.213 7 C -0.571 4.571 8 H 0.079 0.921 9 C -0.022 4.022 10 C 0.029 3.971 11 H 0.110 0.890 12 C -0.155 4.155 13 C -0.186 4.186 14 C 0.293 3.707 15 O -0.487 6.487 16 N -0.357 5.357 17 H 0.071 0.929 18 H 0.010 0.990 19 H 0.035 0.965 20 H 0.115 0.885 21 H 0.124 0.876 22 H 0.140 0.860 23 H 0.118 0.882 24 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 2.874 -7.546 -2.149 8.356 hybrid contribution 0.425 1.609 0.256 1.684 sum 3.299 -5.937 -1.893 7.051 Atomic orbital electron populations 1.70073 1.07597 1.27510 1.51978 1.25859 0.95648 1.02994 0.95124 0.85519 0.79244 0.79573 0.77419 1.18621 1.20420 1.21324 1.21639 0.93488 0.92167 1.49777 0.92060 1.19441 0.94222 0.92643 0.95923 1.21912 0.93962 0.95997 0.85251 0.89027 1.22706 1.02541 0.95331 0.94965 1.22320 0.97074 1.02532 0.96692 1.21569 0.84305 0.80789 0.84028 1.90642 1.65669 1.71012 1.21334 1.46376 1.35090 1.35516 1.18735 0.92939 0.98961 0.96457 0.88486 0.87575 0.86012 0.88169 0.75762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.69 13.29 21.45 0.28 -54.40 14 2 C 0.00 0.09 5.46 84.66 0.46 0.55 14 3 Si 0.96 43.22 29.54 68.60 2.03 45.24 14 4 H -0.26 -11.26 7.11 99.48 0.71 -10.56 14 5 H -0.28 -12.27 7.11 99.48 0.71 -11.56 14 6 H -0.29 -13.01 7.11 99.48 0.71 -12.31 14 7 C -0.53 -28.09 8.90 25.60 0.23 -27.86 14 8 H 0.06 3.08 7.74 -2.91 -0.02 3.06 14 9 C 0.02 0.73 4.58 29.85 0.14 0.87 14 10 C 0.13 4.69 3.45 45.45 0.16 4.84 14 11 H 0.09 2.98 8.14 -2.39 -0.02 2.96 14 12 C -0.12 -3.08 6.70 31.65 0.21 -2.87 14 13 C -0.15 -4.16 6.86 30.59 0.21 -3.95 14 14 C 0.51 19.08 8.43 87.90 0.74 19.83 14 15 O -0.60 -27.18 18.03 -3.03 -0.05 -27.23 14 16 N -0.71 -26.10 5.65 -439.43 -2.48 -28.59 14 17 H 0.26 14.57 8.31 -92.71 -0.77 13.80 14 18 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 14 19 H 0.02 0.85 8.14 -2.39 -0.02 0.83 14 20 H 0.10 2.43 7.89 -2.39 -0.02 2.41 14 21 H 0.11 2.10 8.14 -2.39 -0.02 2.08 14 22 H 0.12 2.73 8.14 -2.39 -0.02 2.71 14 23 H 0.10 2.90 8.14 -2.39 -0.02 2.88 14 24 H 0.41 14.85 8.96 -92.70 -0.83 14.02 14 Total: -1.00 -65.97 213.95 2.28 -63.69 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 0.36 Total: 9.88 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: 2.15 Total: -8.59 kcal Atomic # 7 Polarization: -80.79 SS G_CDS: -2.20 Total: -82.99 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.05 Total: -27.23 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -65.97 2.28 -63.69 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104626960.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.500 kcal (2) G-P(sol) polarization free energy of solvation -65.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds