Wall clock time and date at job start Mon Mar 30 2020 02:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39961 * 128.09117 * 2 1 4 4 C 1.40742 * 126.97723 * 359.96534 * 3 2 1 5 5 H 1.08001 * 119.99879 * 14.44602 * 4 3 2 6 6 C 1.40375 * 119.99594 * 194.44526 * 4 3 2 7 7 N 1.30551 * 119.99574 * 194.82329 * 6 4 3 8 8 Si 1.86799 * 120.00206 * 14.82601 * 6 4 3 9 9 H 1.48496 * 109.46994 * 269.99984 * 8 6 4 10 10 H 1.48501 * 109.46847 * 30.00118 * 8 6 4 11 11 H 1.48500 * 109.46980 * 149.99840 * 8 6 4 12 12 N 1.36945 * 106.03691 * 179.70291 * 3 2 1 13 13 H 0.97005 * 124.28537 * 180.30047 * 12 3 2 14 14 O 1.20852 * 111.42851 * 0.26203 * 12 3 2 15 15 C 1.34146 * 112.03860 * 0.02562 * 14 12 3 16 16 O 1.21984 * 126.66000 * 179.97438 * 15 14 12 17 17 H 1.08996 * 109.46749 * 89.99971 * 1 2 3 18 18 H 1.08992 * 109.46960 * 209.99514 * 1 2 3 19 19 H 1.09000 * 109.46668 * 329.99757 * 1 2 3 20 20 H 0.96994 * 120.00296 * 354.74362 * 7 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3705 1.1015 0.0000 4 6 2.0078 2.4614 -0.0007 5 1 0.9934 2.7499 0.2321 6 6 2.9647 3.4428 -0.3039 7 7 2.7239 4.6961 -0.0290 8 14 4.5824 2.9553 -1.1006 9 1 5.5842 2.6586 -0.0454 10 1 4.3764 1.7486 -1.9411 11 1 5.0726 4.0715 -1.9487 12 7 3.6397 0.5873 0.0068 13 1 4.4471 1.1250 0.0126 14 8 3.6265 -0.6211 0.0055 15 6 2.3777 -1.1109 -0.0028 16 8 2.0569 -2.2878 -0.0065 17 1 -0.3633 0.0000 -1.0276 18 1 -0.3633 -0.8900 0.5137 19 1 -0.3633 0.8900 0.5139 20 1 1.8555 4.9593 0.3137 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107285818.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:40 Heat of formation + Delta-G solvation = -1.411903 kcal Electronic energy + Delta-G solvation = -9661.923714 eV Core-core repulsion = 7633.922143 eV Total energy + Delta-G solvation = -2028.001571 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 169.053 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -43.19578 -36.45527 -34.97627 -32.70354 -30.49960 -27.35735 -25.82000 -21.10637 -20.40631 -18.75895 -17.62682 -16.56845 -14.85912 -14.40330 -14.23830 -12.93745 -12.52238 -12.26445 -11.90916 -11.70023 -11.50313 -11.02139 -10.61888 -10.29786 -9.91325 -9.06775 -8.76438 -7.84768 -6.81671 -5.22672 2.44788 2.71314 2.81346 3.02534 3.45291 3.53237 4.03960 4.66343 5.02281 6.20917 6.58358 6.79922 6.86240 6.91214 7.01109 7.27105 7.34157 7.78204 7.98532 8.31240 9.11071 9.40955 9.48942 Molecular weight = 169.05amu Principal moments of inertia in cm(-1) A = 0.064675 B = 0.020737 C = 0.016275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.828677 B = 1349.906334 C = 1719.973320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 C -0.491 4.491 3 C 0.278 3.722 4 C -0.477 4.477 5 H 0.107 0.893 6 C 0.040 3.960 7 N -0.780 5.780 8 Si 1.027 2.973 9 H -0.261 1.261 10 H -0.251 1.251 11 H -0.258 1.258 12 N -0.562 5.562 13 H 0.431 0.569 14 O -0.108 6.108 15 C 0.458 3.542 16 O -0.555 6.555 17 H 0.030 0.970 18 H 0.040 0.960 19 H 0.042 0.958 20 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.828 1.844 -1.007 3.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.499 4.499 3 C 0.169 3.831 4 C -0.510 4.510 5 H 0.125 0.875 6 C -0.185 4.185 7 N -0.402 5.402 8 Si 0.850 3.150 9 H -0.188 1.188 10 H -0.176 1.176 11 H -0.183 1.183 12 N -0.239 5.239 13 H 0.284 0.716 14 O -0.127 6.127 15 C 0.321 3.679 16 O -0.454 6.454 17 H 0.049 0.951 18 H 0.059 0.941 19 H 0.061 0.939 20 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.360 1.790 -1.485 4.941 hybrid contribution -1.199 -0.131 0.599 1.347 sum 3.161 1.659 -0.885 3.678 Atomic orbital electron populations 1.19147 0.89393 0.99288 0.98756 1.20478 0.96097 0.90710 1.42614 1.19054 0.81857 0.94743 0.87445 1.20255 1.00715 0.88003 1.42070 0.87477 1.27275 1.04833 0.93170 0.93230 1.70368 1.25281 1.18166 1.26352 0.84283 0.73287 0.78582 0.78841 1.18758 1.17558 1.18320 1.41726 1.08176 0.94633 1.79358 0.71575 1.84076 1.36615 1.07144 1.84887 1.19383 0.79042 0.89829 0.79669 1.90836 1.76130 1.18692 1.59722 0.95083 0.94132 0.93892 0.88994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.19 10.33 36.01 0.37 0.18 14 2 C -0.49 -12.70 6.46 -102.87 -0.66 -13.36 14 3 C 0.28 6.87 6.32 -83.99 -0.53 6.34 14 4 C -0.48 -11.48 9.64 -37.83 -0.36 -11.84 14 5 H 0.11 2.62 7.75 -52.49 -0.41 2.22 14 6 C 0.04 0.90 5.52 -17.29 -0.10 0.81 14 7 N -0.78 -17.93 13.64 55.57 0.76 -17.17 14 8 Si 1.03 19.06 25.10 -169.99 -4.27 14.80 14 9 H -0.26 -4.32 6.91 56.52 0.39 -3.93 14 10 H -0.25 -4.73 6.72 56.52 0.38 -4.35 14 11 H -0.26 -4.63 7.11 56.52 0.40 -4.23 14 12 N -0.56 -12.96 5.49 32.46 0.18 -12.79 14 13 H 0.43 8.62 4.29 -40.82 -0.17 8.45 14 14 O -0.11 -2.66 11.17 -7.25 -0.08 -2.75 14 15 C 0.46 12.42 8.61 31.83 0.27 12.69 14 16 O -0.55 -16.11 18.07 -19.23 -0.35 -16.46 14 17 H 0.03 0.66 8.14 -51.93 -0.42 0.24 14 18 H 0.04 0.88 8.14 -51.93 -0.42 0.46 14 19 H 0.04 0.90 7.82 -51.93 -0.41 0.49 14 20 H 0.30 6.62 8.72 -40.82 -0.36 6.27 14 LS Contribution 185.94 15.07 2.80 2.80 Total: -1.00 -28.14 185.94 -2.98 -31.13 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -1.02 Total: 5.62 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -1.01 Total: -5.19 kcal Atomic # 7 Polarization: -30.89 SS G_CDS: 0.94 Total: -29.96 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.43 Total: -19.20 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -4.27 Total: 14.80 kcal Total LS contribution 2.80 Total: 2.80 kcal Total: -28.14 -2.98 -31.13 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107285818.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.717 kcal (2) G-P(sol) polarization free energy of solvation -28.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds