Wall clock time and date at job start Mon Mar 30 2020 02:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39961 * 128.09117 * 2 1 4 4 C 1.40742 * 126.97723 * 359.96534 * 3 2 1 5 5 H 1.08001 * 119.99879 * 14.44602 * 4 3 2 6 6 C 1.40375 * 119.99594 * 194.44526 * 4 3 2 7 7 N 1.30551 * 119.99574 * 194.82329 * 6 4 3 8 8 Si 1.86799 * 120.00206 * 14.82601 * 6 4 3 9 9 H 1.48496 * 109.46994 * 269.99984 * 8 6 4 10 10 H 1.48501 * 109.46847 * 30.00118 * 8 6 4 11 11 H 1.48500 * 109.46980 * 149.99840 * 8 6 4 12 12 N 1.36945 * 106.03691 * 179.70291 * 3 2 1 13 13 H 0.97005 * 124.28537 * 180.30047 * 12 3 2 14 14 O 1.20852 * 111.42851 * 0.26203 * 12 3 2 15 15 C 1.34146 * 112.03860 * 0.02562 * 14 12 3 16 16 O 1.21984 * 126.66000 * 179.97438 * 15 14 12 17 17 H 1.08996 * 109.46749 * 89.99971 * 1 2 3 18 18 H 1.08992 * 109.46960 * 209.99514 * 1 2 3 19 19 H 1.09000 * 109.46668 * 329.99757 * 1 2 3 20 20 H 0.96994 * 120.00296 * 354.74362 * 7 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3705 1.1015 0.0000 4 6 2.0078 2.4614 -0.0007 5 1 0.9934 2.7499 0.2321 6 6 2.9647 3.4428 -0.3039 7 7 2.7239 4.6961 -0.0290 8 14 4.5824 2.9553 -1.1006 9 1 5.5842 2.6586 -0.0454 10 1 4.3764 1.7486 -1.9411 11 1 5.0726 4.0715 -1.9487 12 7 3.6397 0.5873 0.0068 13 1 4.4471 1.1250 0.0126 14 8 3.6265 -0.6211 0.0055 15 6 2.3777 -1.1109 -0.0028 16 8 2.0569 -2.2878 -0.0065 17 1 -0.3633 0.0000 -1.0276 18 1 -0.3633 -0.8900 0.5137 19 1 -0.3633 0.8900 0.5139 20 1 1.8555 4.9593 0.3137 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107285818.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:40 Heat of formation + Delta-G solvation = -18.989670 kcal Electronic energy + Delta-G solvation = -9662.685943 eV Core-core repulsion = 7633.922143 eV Total energy + Delta-G solvation = -2028.763801 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 169.053 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -45.12786 -38.54491 -36.84614 -34.57826 -32.43240 -29.23283 -27.72430 -23.02232 -22.30557 -20.64532 -19.48540 -18.52914 -16.88933 -16.28736 -15.83443 -14.88479 -14.34448 -14.21738 -13.72964 -13.54414 -13.17275 -12.85680 -12.23155 -11.92013 -11.60944 -10.93966 -10.78543 -9.69129 -8.77742 -7.16370 0.70126 1.17323 1.25924 1.48675 1.77446 1.92331 2.07061 2.78192 3.05365 4.31289 4.65728 5.00412 5.02084 5.08685 5.16006 5.39140 5.50846 5.84423 6.13355 6.44906 7.05426 7.45387 7.64959 Molecular weight = 169.05amu Principal moments of inertia in cm(-1) A = 0.064675 B = 0.020737 C = 0.016275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.828677 B = 1349.906334 C = 1719.973320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 C -0.514 4.514 3 C 0.272 3.728 4 C -0.480 4.480 5 H 0.096 0.904 6 C 0.017 3.983 7 N -0.781 5.781 8 Si 1.046 2.954 9 H -0.223 1.223 10 H -0.256 1.256 11 H -0.243 1.243 12 N -0.552 5.552 13 H 0.446 0.554 14 O -0.103 6.103 15 C 0.440 3.560 16 O -0.587 6.587 17 H 0.040 0.960 18 H 0.041 0.959 19 H 0.054 0.946 20 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.859 2.810 -1.206 4.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.521 4.521 3 C 0.162 3.838 4 C -0.513 4.513 5 H 0.114 0.886 6 C -0.206 4.206 7 N -0.402 5.402 8 Si 0.863 3.137 9 H -0.148 1.148 10 H -0.181 1.181 11 H -0.167 1.167 12 N -0.232 5.232 13 H 0.302 0.698 14 O -0.122 6.122 15 C 0.304 3.696 16 O -0.489 6.489 17 H 0.059 0.941 18 H 0.060 0.940 19 H 0.073 0.927 20 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.399 2.790 -1.660 6.300 hybrid contribution -1.558 -0.259 0.667 1.714 sum 3.841 2.531 -0.993 4.706 Atomic orbital electron populations 1.19203 0.87871 0.99913 0.99571 1.20967 0.97583 0.90708 1.42886 1.19082 0.82365 0.94663 0.87711 1.20345 1.00813 0.88231 1.41905 0.88588 1.28353 1.07028 0.92444 0.92729 1.70423 1.25414 1.18451 1.25908 0.84076 0.71359 0.78797 0.79500 1.14759 1.18066 1.16699 1.41875 1.08429 0.94040 1.78810 0.69799 1.84040 1.35663 1.07892 1.84571 1.19578 0.79765 0.89800 0.80408 1.90795 1.76827 1.19693 1.61630 0.94144 0.93997 0.92724 0.89107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.36 10.33 71.24 0.74 0.37 14 2 C -0.51 -26.21 6.46 -18.73 -0.12 -26.33 14 3 C 0.27 13.03 6.32 39.37 0.25 13.28 14 4 C -0.48 -22.36 9.64 23.40 0.23 -22.13 14 5 H 0.10 4.62 7.75 -2.91 -0.02 4.59 14 6 C 0.02 0.75 5.52 85.40 0.47 1.22 14 7 N -0.78 -34.19 13.64 21.90 0.30 -33.89 14 8 Si 1.05 34.89 25.10 68.60 1.72 36.61 14 9 H -0.22 -6.19 6.91 99.48 0.69 -5.51 14 10 H -0.26 -8.83 6.72 99.48 0.67 -8.16 14 11 H -0.24 -7.65 7.11 99.48 0.71 -6.94 14 12 N -0.55 -24.34 5.49 -51.22 -0.28 -24.62 14 13 H 0.45 16.43 4.29 -92.70 -0.40 16.04 14 14 O -0.10 -4.95 11.17 93.82 1.05 -3.90 14 15 C 0.44 23.68 8.61 68.53 0.59 24.27 14 16 O -0.59 -34.28 18.07 17.84 0.32 -33.96 14 17 H 0.04 1.69 8.14 -2.39 -0.02 1.67 14 18 H 0.04 1.81 8.14 -2.39 -0.02 1.79 14 19 H 0.05 2.25 7.82 -2.39 -0.02 2.23 14 20 H 0.30 12.74 8.72 -92.71 -0.81 11.93 14 Total: -1.00 -57.49 185.94 6.04 -51.45 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.78 Total: 17.64 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: 2.15 Total: -9.32 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: 0.02 Total: -58.52 kcal Atomic # 8 Polarization: -39.23 SS G_CDS: 1.37 Total: -37.86 kcal Atomic # 14 Polarization: 34.89 SS G_CDS: 1.72 Total: 36.61 kcal Total: -57.49 6.04 -51.45 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107285818.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.464 kcal (2) G-P(sol) polarization free energy of solvation -57.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds