Wall clock time and date at job start Mon Mar 30 2020 01:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00165 * 2 1 4 4 H 1.48493 * 109.47163 * 270.00439 * 3 2 1 5 5 H 1.48500 * 109.46726 * 30.00621 * 3 2 1 6 6 H 1.48504 * 109.46927 * 150.00270 * 3 2 1 7 7 C 1.37879 * 120.00089 * 180.02562 * 2 1 3 8 8 C 1.51264 * 120.85152 * 180.02562 * 7 2 1 9 9 C 1.53230 * 108.54060 * 231.32414 * 8 7 2 10 10 C 1.52955 * 109.40686 * 305.37674 * 9 8 7 11 11 H 1.08993 * 109.41280 * 303.49105 * 10 9 8 12 12 C 1.50697 * 109.41173 * 183.63019 * 10 9 8 13 13 O 1.20762 * 119.99928 * 120.00399 * 12 10 9 14 14 C 1.53381 * 109.91008 * 63.61144 * 10 9 8 15 15 C 1.51270 * 120.84854 * 0.02562 * 7 2 1 16 16 H 0.97004 * 120.00027 * 359.97438 * 1 2 3 17 17 H 1.09001 * 109.62865 * 351.04644 * 8 7 2 18 18 H 1.09011 * 109.62659 * 111.41984 * 8 7 2 19 19 H 1.09007 * 109.47522 * 65.35690 * 9 8 7 20 20 H 1.09003 * 109.48254 * 185.39094 * 9 8 7 21 21 H 1.08002 * 120.00167 * 299.99378 * 12 10 9 22 22 H 1.08993 * 109.73630 * 176.50716 * 14 10 9 23 23 H 1.08997 * 109.45237 * 56.32900 * 14 10 9 24 24 H 1.09002 * 109.62532 * 248.38858 * 15 7 2 25 25 H 1.09001 * 109.62715 * 8.76545 * 15 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 6 3.5170 -1.2165 0.0000 9 6 3.9911 -2.1307 -1.1346 10 6 3.3403 -3.5067 -0.9842 11 1 3.5738 -3.9123 0.0002 12 6 3.8743 -4.4322 -2.0469 13 8 4.4542 -5.4433 -1.7311 14 6 1.8190 -3.3844 -1.1364 15 6 1.2677 -2.5152 -0.0017 16 1 -0.4850 0.8401 0.0004 17 1 3.8982 -0.2078 -0.1589 18 1 3.8772 -1.5975 0.9558 19 1 3.7072 -1.6971 -2.0935 20 1 5.0753 -2.2344 -1.0890 21 1 3.7383 -4.1913 -3.0908 22 1 1.3638 -4.3737 -1.0906 23 1 1.5862 -2.9210 -2.0951 24 1 1.4192 -3.0197 0.9525 25 1 0.2032 -2.3406 -0.1585 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139971763.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:36 Heat of formation + Delta-G solvation = -61.385099 kcal Electronic energy + Delta-G solvation = -9680.822224 eV Core-core repulsion = 7851.479025 eV Total energy + Delta-G solvation = -1829.343199 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.89077 -36.36604 -32.41702 -29.76902 -28.58090 -23.63212 -21.58516 -20.64881 -19.42903 -16.39210 -15.19349 -14.81292 -14.43247 -13.79057 -13.20735 -12.73905 -12.30194 -12.02400 -11.65427 -11.02500 -10.81513 -10.64719 -10.27884 -9.98527 -9.66791 -9.36783 -8.68795 -8.60663 -8.48507 -6.12894 -4.03852 2.40821 3.24500 3.33861 3.35073 4.35660 4.81066 5.13480 5.52160 5.77348 5.81381 6.32552 6.42764 6.53462 6.62926 6.78426 6.92436 7.02526 7.10369 7.36884 7.61434 7.69876 7.75885 7.84777 8.36705 8.94027 9.51819 10.96796 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.075525 B = 0.015645 C = 0.013670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.647129 B = 1789.253855 C = 2047.748691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.075 3.925 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.267 1.267 7 C -0.489 4.489 8 C -0.015 4.015 9 C -0.097 4.097 10 C -0.142 4.142 11 H 0.080 0.920 12 C 0.351 3.649 13 O -0.484 6.484 14 C -0.098 4.098 15 C 0.010 3.990 16 H 0.264 0.736 17 H 0.032 0.968 18 H 0.018 0.982 19 H 0.059 0.941 20 H 0.035 0.965 21 H 0.084 0.916 22 H 0.033 0.967 23 H 0.057 0.943 24 H 0.004 0.996 25 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.391 -1.870 -3.263 5.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.128 4.128 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.192 1.192 7 C -0.508 4.508 8 C -0.052 4.052 9 C -0.135 4.135 10 C -0.161 4.161 11 H 0.099 0.901 12 C 0.209 3.791 13 O -0.357 6.357 14 C -0.136 4.136 15 C -0.028 4.028 16 H 0.074 0.926 17 H 0.050 0.950 18 H 0.036 0.964 19 H 0.077 0.923 20 H 0.053 0.947 21 H 0.100 0.900 22 H 0.052 0.948 23 H 0.076 0.924 24 H 0.023 0.977 25 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.532 -2.295 -3.090 5.946 hybrid contribution 0.334 1.047 -0.079 1.102 sum 4.866 -1.248 -3.169 5.939 Atomic orbital electron populations 1.69832 1.06171 1.26968 1.49800 1.24857 0.94729 0.98594 0.94571 0.86655 0.79947 0.83285 0.78452 1.20370 1.21627 1.19224 1.20026 0.89309 0.91483 1.50002 1.19732 0.96804 0.94995 0.93701 1.21487 0.96372 0.93996 1.01608 1.22042 0.98830 0.96651 0.98573 0.90137 1.26407 0.72687 0.83776 0.96210 1.90318 1.32455 1.26173 1.86783 1.21633 0.91143 0.98469 1.02342 1.19363 0.98675 0.92883 0.91831 0.92557 0.94983 0.96352 0.92260 0.94665 0.89989 0.94813 0.92447 0.97723 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.22 12.73 55.43 0.71 -24.52 15 2 C 0.07 2.01 5.46 -17.82 -0.10 1.92 15 3 Si 0.89 20.69 27.27 -169.99 -4.64 16.05 15 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 15 6 H -0.27 -6.05 6.46 56.52 0.37 -5.68 15 7 C -0.49 -12.62 5.52 -98.92 -0.55 -13.16 15 8 C -0.01 -0.34 5.59 -27.49 -0.15 -0.49 15 9 C -0.10 -1.86 5.20 -26.64 -0.14 -2.00 15 10 C -0.14 -2.67 2.51 -91.60 -0.23 -2.90 15 11 H 0.08 1.61 8.12 -51.93 -0.42 1.19 15 12 C 0.35 5.86 10.43 36.00 0.38 6.23 15 13 O -0.48 -9.45 17.90 6.00 0.11 -9.34 15 14 C -0.10 -1.99 5.24 -26.43 -0.14 -2.13 15 15 C 0.01 0.24 5.95 -27.50 -0.16 0.08 15 16 H 0.26 7.11 8.31 -40.82 -0.34 6.77 15 17 H 0.03 0.72 4.78 -51.93 -0.25 0.47 15 18 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 15 19 H 0.06 1.10 8.14 -51.92 -0.42 0.68 15 20 H 0.03 0.61 8.14 -51.93 -0.42 0.18 15 21 H 0.08 1.10 8.06 -52.49 -0.42 0.68 15 22 H 0.03 0.63 8.14 -51.93 -0.42 0.20 15 23 H 0.06 1.15 8.14 -51.93 -0.42 0.72 15 24 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 15 25 H 0.06 1.59 7.07 -51.93 -0.37 1.22 15 LS Contribution 209.66 15.07 3.16 3.16 Total: -1.00 -28.42 209.66 -4.92 -33.34 By element: Atomic # 1 Polarization: -3.06 SS G_CDS: -3.17 Total: -6.23 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: -1.09 Total: -12.46 kcal Atomic # 7 Polarization: -25.22 SS G_CDS: 0.71 Total: -24.52 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.11 Total: -9.34 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.64 Total: 16.05 kcal Total LS contribution 3.16 Total: 3.16 kcal Total: -28.42 -4.92 -33.34 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139971763.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.044 kcal (2) G-P(sol) polarization free energy of solvation -28.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds