Wall clock time and date at job start Mon Mar 30 2020 01:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99788 * 2 1 4 4 H 1.48503 * 109.47177 * 269.99669 * 3 2 1 5 5 H 1.48495 * 109.47285 * 29.99879 * 3 2 1 6 6 H 1.48501 * 109.47225 * 150.00350 * 3 2 1 7 7 C 1.37877 * 120.00193 * 180.02562 * 2 1 3 8 8 C 1.51268 * 120.84790 * 179.97438 * 7 2 1 9 9 C 1.53234 * 108.53616 * 128.67194 * 8 7 2 10 10 C 1.52966 * 109.40173 * 54.62559 * 9 8 7 11 11 H 1.08997 * 109.41337 * 56.50837 * 10 9 8 12 12 C 1.50700 * 109.40950 * 176.29626 * 10 9 8 13 13 O 1.20763 * 119.99892 * 239.99726 * 12 10 9 14 14 C 1.52952 * 109.81570 * 296.40167 * 10 9 8 15 15 C 1.51265 * 120.84887 * 359.97438 * 7 2 1 16 16 H 0.96999 * 119.99887 * 0.02562 * 1 2 3 17 17 H 1.08992 * 109.62819 * 8.95683 * 8 7 2 18 18 H 1.09002 * 109.62503 * 248.38475 * 8 7 2 19 19 H 1.08997 * 109.48279 * 294.65064 * 9 8 7 20 20 H 1.08996 * 109.48200 * 174.60322 * 9 8 7 21 21 H 1.07997 * 120.00018 * 60.00178 * 12 10 9 22 22 H 1.09003 * 109.48420 * 183.58028 * 14 10 9 23 23 H 1.09002 * 109.48387 * 303.61465 * 14 10 9 24 24 H 1.08996 * 109.62592 * 111.61555 * 15 7 2 25 25 H 1.09001 * 109.78825 * 351.13553 * 15 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 6 3.5171 -1.2164 -0.0011 9 6 3.9912 -2.1315 1.1328 10 6 3.3404 -3.5075 0.9811 11 1 3.5740 -3.9122 -0.0037 12 6 3.8757 -4.4344 2.0419 13 8 4.4554 -5.4450 1.7241 14 6 1.8235 -3.3832 1.1329 15 6 1.2678 -2.5151 -0.0005 16 1 -0.4850 0.8400 -0.0004 17 1 3.8982 -0.2078 0.1588 18 1 3.8772 -1.5997 -0.9559 19 1 3.7072 -1.6989 2.0920 20 1 5.0753 -2.2351 1.0871 21 1 3.7408 -4.1949 3.0863 22 1 1.3711 -4.3738 1.0873 23 1 1.5908 -2.9209 2.0922 24 1 1.4194 -3.0188 -0.9552 25 1 0.2030 -2.3438 0.1580 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000141522071.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:38 Heat of formation + Delta-G solvation = -60.764659 kcal Electronic energy + Delta-G solvation = -9682.881945 eV Core-core repulsion = 7853.565650 eV Total energy + Delta-G solvation = -1829.316295 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.89752 -36.37971 -32.41909 -29.76942 -28.58096 -23.62761 -21.58613 -20.64968 -19.42491 -16.39743 -15.18802 -14.81973 -14.44688 -13.79032 -13.20557 -12.73403 -12.38093 -12.03088 -11.60289 -11.03062 -10.79656 -10.63674 -10.30139 -9.99669 -9.57816 -9.37457 -8.69719 -8.61437 -8.45785 -6.12429 -4.03641 2.40906 3.25336 3.33563 3.34033 4.35643 4.80978 5.13187 5.52745 5.77913 5.82361 6.33203 6.43347 6.54379 6.63486 6.79353 6.93404 7.03971 7.11257 7.36875 7.61751 7.69774 7.76032 7.84981 8.36963 8.94094 9.51922 10.97185 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.075602 B = 0.015644 C = 0.013671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.269372 B = 1789.375730 C = 2047.640515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.075 3.925 3 Si 0.887 3.113 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.264 1.264 7 C -0.488 4.488 8 C -0.021 4.021 9 C -0.096 4.096 10 C -0.142 4.142 11 H 0.080 0.920 12 C 0.351 3.649 13 O -0.484 6.484 14 C -0.098 4.098 15 C 0.010 3.990 16 H 0.264 0.736 17 H 0.037 0.963 18 H 0.018 0.982 19 H 0.058 0.942 20 H 0.034 0.966 21 H 0.084 0.916 22 H 0.032 0.968 23 H 0.057 0.943 24 H 0.004 0.996 25 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.421 -1.831 3.267 5.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.128 4.128 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.189 1.189 7 C -0.507 4.507 8 C -0.058 4.058 9 C -0.134 4.134 10 C -0.161 4.161 11 H 0.098 0.902 12 C 0.209 3.791 13 O -0.357 6.357 14 C -0.136 4.136 15 C -0.027 4.027 16 H 0.074 0.926 17 H 0.055 0.945 18 H 0.036 0.964 19 H 0.077 0.923 20 H 0.053 0.947 21 H 0.100 0.900 22 H 0.051 0.949 23 H 0.076 0.924 24 H 0.023 0.977 25 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.561 -2.257 3.095 5.956 hybrid contribution 0.328 1.033 0.055 1.085 sum 4.889 -1.224 3.150 5.943 Atomic orbital electron populations 1.69835 1.06158 1.26950 1.49892 1.24862 0.94733 0.98593 0.94578 0.86675 0.79957 0.83275 0.78528 1.20429 1.21628 1.18932 1.20032 0.89336 0.91474 1.49857 1.19811 0.96825 0.95470 0.93691 1.21473 0.96333 0.93931 1.01637 1.21972 0.98861 0.96676 0.98590 0.90155 1.26407 0.72697 0.83760 0.96207 1.90318 1.32479 1.26208 1.86721 1.21555 0.91217 0.98440 1.02358 1.19360 0.98620 0.92901 0.91830 0.92569 0.94500 0.96382 0.92296 0.94719 0.89992 0.94898 0.92448 0.97727 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.24 12.74 55.43 0.71 -24.54 15 2 C 0.07 2.01 5.46 -17.82 -0.10 1.91 15 3 Si 0.89 20.60 27.53 -169.99 -4.68 15.92 15 4 H -0.28 -6.46 7.11 56.52 0.40 -6.05 15 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 15 6 H -0.26 -5.87 6.11 56.52 0.35 -5.53 15 7 C -0.49 -12.58 5.51 -98.93 -0.55 -13.12 15 8 C -0.02 -0.47 5.59 -27.48 -0.15 -0.62 15 9 C -0.10 -1.86 5.20 -26.63 -0.14 -1.99 15 10 C -0.14 -2.68 2.51 -91.81 -0.23 -2.91 15 11 H 0.08 1.61 8.12 -51.93 -0.42 1.19 15 12 C 0.35 5.87 10.43 36.01 0.38 6.25 15 13 O -0.48 -9.47 17.90 6.00 0.11 -9.36 15 14 C -0.10 -1.99 5.20 -26.65 -0.14 -2.13 15 15 C 0.01 0.25 5.96 -27.50 -0.16 0.09 15 16 H 0.26 7.11 8.31 -40.82 -0.34 6.77 15 17 H 0.04 0.83 4.59 -51.93 -0.24 0.59 15 18 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 15 19 H 0.06 1.11 8.14 -51.93 -0.42 0.68 15 20 H 0.03 0.60 8.14 -51.93 -0.42 0.18 15 21 H 0.08 1.10 8.06 -52.49 -0.42 0.68 15 22 H 0.03 0.61 8.14 -51.93 -0.42 0.19 15 23 H 0.06 1.15 8.14 -51.93 -0.42 0.72 15 24 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 15 25 H 0.06 1.59 7.08 -51.93 -0.37 1.22 15 LS Contribution 209.36 15.07 3.16 3.16 Total: -1.00 -28.40 209.36 -4.98 -33.38 By element: Atomic # 1 Polarization: -2.85 SS G_CDS: -3.18 Total: -6.03 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -1.09 Total: -12.53 kcal Atomic # 7 Polarization: -25.24 SS G_CDS: 0.71 Total: -24.54 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.11 Total: -9.36 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.68 Total: 15.92 kcal Total LS contribution 3.16 Total: 3.16 kcal Total: -28.40 -4.98 -33.38 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000141522071.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.380 kcal (2) G-P(sol) polarization free energy of solvation -28.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds