Wall clock time and date at job start Mon Mar 30 2020 02:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86800 * 120.00170 * 2 1 4 4 H 1.48504 * 109.46893 * 270.00326 * 3 2 1 5 5 H 1.48497 * 109.47355 * 29.99944 * 3 2 1 6 6 H 1.48499 * 109.47151 * 150.00349 * 3 2 1 7 7 C 1.37885 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99664 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99579 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.47338 * 60.00512 * 9 7 2 11 11 N 1.46894 * 109.47134 * 299.99698 * 9 7 2 12 12 C 1.50709 * 109.46759 * 180.02562 * 9 7 2 13 13 N 1.31069 * 126.65900 * 305.16983 * 12 9 7 14 14 N 1.28845 * 107.98924 * 180.24444 * 13 12 9 15 15 N 1.28737 * 109.39281 * 359.75378 * 14 13 12 16 16 N 1.29020 * 108.81441 * 359.97438 * 15 14 13 17 17 H 0.97001 * 126.43729 * 179.97438 * 16 15 14 18 18 H 0.97004 * 120.00354 * 359.97438 * 1 2 3 19 19 H 1.00906 * 111.00083 * 176.04795 * 11 9 7 20 20 H 1.00905 * 111.00659 * 300.00178 * 11 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 7 0.4069 -2.5772 1.1992 12 6 2.2302 -3.6447 -0.0005 13 7 3.1991 -3.8459 -0.8600 14 7 3.8084 -4.9309 -0.5259 15 7 3.2566 -5.4241 0.5275 16 7 2.2820 -4.6576 0.8842 17 1 1.6940 -4.7894 1.6444 18 1 -0.4851 0.8400 0.0004 19 1 -0.1572 -3.4139 1.1907 20 1 0.9652 -2.5260 2.0382 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000142346814.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:52 Heat of formation + Delta-G solvation = 110.930217 kcal Electronic energy + Delta-G solvation = -9483.327023 eV Core-core repulsion = 7524.782474 eV Total energy + Delta-G solvation = -1958.544549 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 169.066 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -43.52427 -35.37109 -33.91236 -32.00694 -30.54753 -26.64024 -23.94042 -23.08763 -21.08199 -18.26161 -16.98862 -15.89671 -15.02359 -14.72148 -13.89949 -13.10452 -12.31261 -11.79755 -11.77494 -10.95157 -10.92216 -10.88046 -10.55033 -10.13702 -9.82689 -9.07413 -8.59495 -7.80780 -6.10377 -4.26049 1.86945 2.91529 2.96409 3.28024 3.34600 3.39179 4.35439 4.94972 5.16315 5.27829 5.72303 6.09671 6.24800 6.88590 6.99132 7.69215 7.79648 8.08850 8.46785 8.82473 9.24672 9.43838 10.94498 Molecular weight = 169.07amu Principal moments of inertia in cm(-1) A = 0.075924 B = 0.015252 C = 0.013458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.701641 B = 1835.405887 C = 2079.990004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.087 3.913 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.532 4.532 8 H 0.063 0.937 9 C 0.298 3.702 10 H 0.082 0.918 11 N -0.807 5.807 12 C 0.205 3.795 13 N -0.306 5.306 14 N -0.086 5.086 15 N -0.124 5.124 16 N -0.427 5.427 17 H 0.446 0.554 18 H 0.261 0.739 19 H 0.302 0.698 20 H 0.324 0.676 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.225 -4.351 3.353 5.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.122 4.122 3 Si 0.724 3.276 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.571 4.571 8 H 0.082 0.918 9 C 0.184 3.816 10 H 0.099 0.901 11 N -0.334 5.334 12 C -0.077 4.077 13 N -0.156 5.156 14 N -0.082 5.082 15 N -0.111 5.111 16 N -0.157 5.157 17 H 0.292 0.708 18 H 0.071 0.929 19 H 0.113 0.887 20 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.453 -4.274 2.436 4.940 hybrid contribution -0.113 0.279 1.218 1.255 sum 0.340 -3.995 3.655 5.425 Atomic orbital electron populations 1.70070 1.05757 1.26513 1.45565 1.24904 0.94772 0.98925 0.93568 0.86529 0.79790 0.82873 0.78378 1.20329 1.21146 1.19882 1.20662 0.92689 0.88111 1.55661 0.91844 1.18214 0.85490 0.85661 0.92197 0.90096 1.59094 1.27701 1.42411 1.04238 1.29170 0.99151 0.93347 0.86023 1.75042 1.06611 1.10089 1.23824 1.78482 1.20178 1.04227 1.05278 1.78644 1.01100 1.18690 1.12698 1.46203 1.25496 1.18527 1.25424 0.70794 0.92943 0.88667 0.86319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.68 12.77 55.43 0.71 -21.98 14 2 C 0.09 2.26 5.39 -17.82 -0.10 2.16 14 3 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 14 4 H -0.28 -6.35 7.11 56.52 0.40 -5.94 14 5 H -0.29 -6.46 7.11 56.52 0.40 -6.05 14 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 14 7 C -0.53 -13.72 8.70 -34.44 -0.30 -14.02 14 8 H 0.06 1.71 7.74 -52.49 -0.41 1.30 14 9 C 0.30 6.67 3.16 -70.02 -0.22 6.45 14 10 H 0.08 1.98 8.14 -51.93 -0.42 1.56 14 11 N -0.81 -15.68 8.07 -6.65 -0.05 -15.73 14 12 C 0.21 4.23 7.33 -155.43 -1.14 3.09 14 13 N -0.31 -7.01 12.34 32.70 0.40 -6.61 14 14 N -0.09 -1.86 13.43 60.35 0.81 -1.05 14 15 N -0.12 -2.36 13.48 60.35 0.81 -1.55 14 16 N -0.43 -7.20 6.87 32.67 0.22 -6.97 14 17 H 0.45 5.50 8.48 -190.92 -1.62 3.88 14 18 H 0.26 6.72 8.31 -40.82 -0.34 6.38 14 19 H 0.30 4.79 8.93 -39.29 -0.35 4.44 14 20 H 0.32 5.84 8.98 -39.29 -0.35 5.49 14 LS Contribution 192.98 15.07 2.91 2.91 Total: -1.00 -29.41 192.98 -3.25 -32.66 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -2.29 Total: 5.16 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -1.76 Total: -2.31 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: 2.91 Total: -53.89 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 2.91 Total: 2.91 kcal Total: -29.41 -3.25 -32.66 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142346814.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.587 kcal (2) G-P(sol) polarization free energy of solvation -29.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds