Wall clock time and date at job start Mon Mar 30 2020 02:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47259 * 2 1 4 4 H 1.09003 * 110.05237 * 306.41558 * 3 2 1 5 5 C 1.53872 * 110.03323 * 67.83535 * 3 2 1 6 6 C 1.54266 * 106.60044 * 119.28544 * 5 3 2 7 7 C 1.54893 * 104.19500 * 23.61099 * 6 5 3 8 8 H 1.09000 * 110.75571 * 80.37081 * 7 6 5 9 9 C 1.50697 * 110.75379 * 203.74545 * 7 6 5 10 10 H 1.07999 * 120.00325 * 113.32969 * 9 7 6 11 11 C 1.37880 * 119.99873 * 293.32564 * 9 7 6 12 12 N 1.31518 * 119.99845 * 0.02562 * 11 9 7 13 13 Si 1.86797 * 120.00048 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47325 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.47278 * 119.99959 * 13 11 9 16 16 H 1.48497 * 109.47387 * 239.99920 * 13 11 9 17 17 C 1.54266 * 110.03393 * 185.00089 * 3 2 1 18 18 H 1.09001 * 109.47484 * 180.02562 * 1 2 3 19 19 H 1.09001 * 109.47457 * 299.99927 * 1 2 3 20 20 H 1.09003 * 109.47400 * 59.99981 * 1 2 3 21 21 H 1.09010 * 109.47280 * 239.99866 * 2 1 3 22 22 H 1.09003 * 109.47400 * 120.00019 * 2 1 3 23 23 H 1.09002 * 110.03208 * 238.56771 * 5 3 2 24 24 H 1.08996 * 110.03362 * 359.97438 * 5 3 2 25 25 H 1.09002 * 110.48438 * 142.28717 * 6 5 3 26 26 H 1.08998 * 110.48431 * 264.79545 * 6 5 3 27 27 H 0.97002 * 119.99577 * 180.02562 * 12 11 9 28 28 H 1.09001 * 110.48620 * 335.78481 * 17 3 2 29 29 H 1.09004 * 110.48798 * 98.42315 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5915 1.9975 -0.8240 5 6 1.7015 2.1212 1.3388 6 6 3.0450 2.5270 1.9793 7 6 4.0201 2.6343 0.7807 8 1 3.8966 3.5873 0.2663 9 6 5.4456 2.4511 1.2340 10 1 6.0058 1.5838 0.9172 11 6 6.0347 3.3909 2.0530 12 7 5.3523 4.4469 2.4391 13 14 7.8018 3.1643 2.6143 14 1 8.3444 1.9046 2.0451 15 1 8.6209 4.3114 2.1464 16 1 7.8455 3.0972 4.0971 17 6 3.5773 1.4594 -0.1263 18 1 -0.3634 -1.0276 0.0005 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 1.8933 -0.5139 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 1.0887 3.0057 1.1646 24 1 1.1735 1.4232 1.9884 25 1 2.9522 3.4892 2.4830 26 1 3.3803 1.7617 2.6793 27 1 5.7669 5.1082 3.0150 28 1 3.9999 0.5206 0.2318 29 1 3.8733 1.6425 -1.1593 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000148638451.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:30 Heat of formation + Delta-G solvation = -54.224522 kcal Electronic energy + Delta-G solvation = -9817.443446 eV Core-core repulsion = 8124.243847 eV Total energy + Delta-G solvation = -1693.199598 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.30208 -35.16632 -33.19981 -29.76755 -28.75354 -25.80067 -23.37043 -21.03680 -20.20628 -18.28219 -16.68927 -16.51566 -15.40246 -14.76247 -14.23239 -13.96597 -13.84527 -13.13430 -12.93664 -12.71546 -12.49146 -12.27133 -12.06653 -11.51398 -11.38903 -11.18962 -11.07321 -10.79203 -10.77475 -10.45481 -8.11943 -6.21730 1.39379 1.40537 1.52708 2.43464 3.18591 4.01084 4.02481 4.10499 4.51686 4.56299 4.66866 4.84410 4.92874 5.03468 5.09062 5.13935 5.21008 5.26058 5.33542 5.44999 5.50963 5.52796 5.67138 5.73641 5.96540 6.01410 6.41394 6.90179 7.45738 8.97637 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.095977 B = 0.011835 C = 0.011179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 291.667871 B = 2365.290983 C = 2504.081229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.087 4.087 4 H 0.067 0.933 5 C -0.113 4.113 6 C -0.098 4.098 7 C 0.035 3.965 8 H -0.004 1.004 9 C -0.532 4.532 10 H 0.052 0.948 11 C 0.008 3.992 12 N -0.923 5.923 13 Si 0.955 3.045 14 H -0.266 1.266 15 H -0.280 1.280 16 H -0.280 1.280 17 C -0.108 4.108 18 H 0.064 0.936 19 H 0.052 0.948 20 H 0.057 0.943 21 H 0.064 0.936 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.067 0.933 25 H 0.031 0.969 26 H 0.030 0.970 27 H 0.260 0.740 28 H 0.051 0.949 29 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.706 -6.730 -3.112 9.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.105 4.105 4 H 0.086 0.914 5 C -0.150 4.150 6 C -0.136 4.136 7 C 0.017 3.983 8 H 0.015 0.985 9 C -0.570 4.570 10 H 0.070 0.930 11 C -0.190 4.190 12 N -0.563 5.563 13 Si 0.781 3.219 14 H -0.190 1.190 15 H -0.206 1.206 16 H -0.206 1.206 17 C -0.146 4.146 18 H 0.083 0.917 19 H 0.071 0.929 20 H 0.076 0.924 21 H 0.083 0.917 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.086 0.914 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.699 -6.582 -3.013 9.863 hybrid contribution 1.113 0.412 0.507 1.290 sum -5.586 -6.171 -2.506 8.693 Atomic orbital electron populations 1.21779 0.94716 1.02001 1.01951 1.21573 0.96666 0.95016 1.01629 1.21771 0.94961 0.96724 0.97083 0.91425 1.22240 0.96736 0.99381 0.96667 1.22128 0.94942 0.98120 0.98446 1.19594 0.93385 0.92826 0.92517 0.98537 1.21597 0.98855 1.06919 1.29625 0.92980 1.25821 1.01868 0.94919 0.96374 1.70112 1.38219 1.11745 1.36206 0.85550 0.80188 0.78240 0.77961 1.18992 1.20572 1.20572 1.22426 0.95042 0.98682 0.98422 0.91692 0.92867 0.92415 0.91678 0.92762 0.92855 0.91403 0.95038 0.95080 0.93149 0.92974 0.93387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 9.74 71.98 0.70 -2.64 15 2 C -0.11 -3.13 5.06 30.59 0.15 -2.97 15 3 C -0.09 -3.03 2.93 -10.07 -0.03 -3.06 15 4 H 0.07 2.22 8.14 -2.39 -0.02 2.20 15 5 C -0.11 -4.27 5.96 31.32 0.19 -4.08 15 6 C -0.10 -4.81 5.75 31.67 0.18 -4.63 15 7 C 0.04 1.86 2.73 -10.25 -0.03 1.83 15 8 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 15 9 C -0.53 -30.61 8.49 25.60 0.22 -30.39 15 10 H 0.05 2.94 7.77 -2.91 -0.02 2.92 15 11 C 0.01 0.48 5.36 84.65 0.45 0.94 15 12 N -0.92 -55.77 12.41 21.45 0.27 -55.50 15 13 Si 0.96 44.89 29.54 68.60 2.03 46.91 15 14 H -0.27 -12.04 7.11 99.48 0.71 -11.33 15 15 H -0.28 -12.85 7.11 99.48 0.71 -12.15 15 16 H -0.28 -12.85 7.11 99.48 0.71 -12.15 15 17 C -0.11 -4.59 5.77 31.67 0.18 -4.41 15 18 H 0.06 1.24 8.14 -2.39 -0.02 1.22 15 19 H 0.05 1.23 7.00 -2.39 -0.02 1.21 15 20 H 0.06 1.22 8.14 -2.39 -0.02 1.20 15 21 H 0.06 1.69 8.14 -2.38 -0.02 1.67 15 22 H 0.05 1.59 8.14 -2.39 -0.02 1.57 15 23 H 0.05 1.93 8.14 -2.39 -0.02 1.91 15 24 H 0.07 2.28 6.87 -2.39 -0.02 2.26 15 25 H 0.03 1.68 7.63 -2.39 -0.02 1.67 15 26 H 0.03 1.55 8.04 -2.39 -0.02 1.53 15 27 H 0.26 14.82 8.31 -92.71 -0.77 14.05 15 28 H 0.05 2.20 7.75 -2.39 -0.02 2.19 15 29 H 0.05 1.94 8.14 -2.38 -0.02 1.92 15 Total: -1.00 -61.73 233.57 5.40 -56.33 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: 1.08 Total: 1.68 kcal Atomic # 6 Polarization: -51.44 SS G_CDS: 2.02 Total: -49.42 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: 0.27 Total: -55.50 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -61.73 5.40 -56.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148638451.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.108 kcal (2) G-P(sol) polarization free energy of solvation -61.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds