Wall clock time and date at job start Mon Mar 30 2020 02:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 H 1.08003 * 120.00271 * 119.99914 * 3 2 1 5 5 C 1.37886 * 119.99979 * 300.00171 * 3 2 1 6 6 N 1.31509 * 120.00076 * 359.97438 * 5 3 2 7 7 Si 1.86803 * 119.99822 * 180.02562 * 5 3 2 8 8 H 1.48506 * 109.46938 * 60.00034 * 7 5 3 9 9 H 1.48500 * 109.46921 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46946 * 299.99979 * 7 5 3 11 11 C 1.52997 * 109.47127 * 240.00207 * 2 1 3 12 12 C 1.53002 * 109.47143 * 299.99835 * 11 2 1 13 13 C 1.52997 * 109.47092 * 300.00129 * 12 11 2 14 14 C 1.53002 * 109.46978 * 59.99700 * 13 12 11 15 15 C 1.52993 * 109.47392 * 299.99957 * 14 13 12 16 16 H 1.09001 * 109.46801 * 60.00064 * 1 2 3 17 17 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 18 18 H 1.09000 * 109.47050 * 299.99952 * 1 2 3 19 19 H 0.96999 * 120.00100 * 180.02562 * 6 5 3 20 20 H 1.09004 * 109.47261 * 59.99697 * 11 2 1 21 21 H 1.09002 * 109.47153 * 179.97438 * 11 2 1 22 22 H 1.09000 * 109.47312 * 180.02562 * 12 11 2 23 23 H 1.09002 * 109.47067 * 59.99982 * 12 11 2 24 24 H 1.09002 * 109.47045 * 299.99867 * 13 12 11 25 25 H 1.08998 * 109.47624 * 180.02562 * 13 12 11 26 26 H 1.09004 * 109.47006 * 180.02562 * 14 13 12 27 27 H 1.09002 * 109.46838 * 60.00684 * 14 13 12 28 28 H 1.09002 * 109.47722 * 300.00185 * 15 14 13 29 29 H 1.09000 * 109.47250 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 1 2.6532 1.7741 0.8100 5 6 1.6992 2.2698 -1.0341 6 7 0.9435 1.8396 -2.0207 7 14 2.3224 4.0308 -1.0344 8 1 3.8074 4.0303 -1.0349 9 1 1.8277 4.7307 -2.2472 10 1 1.8279 4.7311 0.1781 11 6 2.0401 -0.7212 -1.2492 12 6 1.5301 -2.1637 -1.2493 13 6 2.0401 -2.8850 -0.0001 14 6 1.5301 -2.1637 1.2492 15 6 2.0401 -0.7212 1.2492 16 1 -0.3633 0.5138 -0.8900 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3633 0.5138 0.8900 19 1 0.7094 2.4367 -2.7484 20 1 1.6767 -0.2074 -2.1393 21 1 3.1301 -0.7208 -1.2495 22 1 1.8938 -2.6777 -2.1390 23 1 0.4401 -2.1637 -1.2493 24 1 3.1301 -2.8849 -0.0001 25 1 1.6772 -3.9128 -0.0002 26 1 1.8938 -2.6773 2.1392 27 1 0.4401 -2.1638 1.2492 28 1 3.1301 -0.7211 1.2492 29 1 1.6771 -0.2075 2.1394 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167413035.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:49 Heat of formation + Delta-G solvation = -30.268260 kcal Electronic energy + Delta-G solvation = -10299.175197 eV Core-core repulsion = 8607.014420 eV Total energy + Delta-G solvation = -1692.160777 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -37.99042 -33.04476 -30.20441 -29.48338 -25.46894 -24.70428 -21.40304 -20.59187 -17.46329 -16.10511 -14.71298 -13.95953 -13.43588 -13.36720 -12.45069 -12.11982 -11.71050 -11.23402 -11.08721 -10.87004 -10.60931 -10.38565 -9.98262 -9.94285 -9.75917 -9.62761 -9.09312 -8.64834 -8.34965 -8.18388 -5.86316 -3.96313 3.35406 3.39929 3.42957 4.48937 5.37208 5.65523 5.77046 5.78806 6.31636 6.42478 6.50351 6.58980 6.63045 6.74436 6.84024 6.85996 7.04407 7.16228 7.17186 7.35525 7.39283 7.64026 7.83335 7.86006 8.24645 8.36557 8.61411 9.05307 9.68137 11.13688 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.075222 B = 0.016442 C = 0.015503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.142208 B = 1702.511457 C = 1805.645618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.071 3.929 3 C -0.504 4.504 4 H 0.051 0.949 5 C 0.063 3.937 6 N -0.888 5.888 7 Si 0.887 3.113 8 H -0.279 1.279 9 H -0.288 1.288 10 H -0.279 1.279 11 C -0.103 4.103 12 C -0.122 4.122 13 C -0.112 4.112 14 C -0.119 4.119 15 C -0.103 4.103 16 H 0.079 0.921 17 H 0.014 0.986 18 H 0.019 0.981 19 H 0.258 0.742 20 H 0.090 0.910 21 H 0.030 0.970 22 H 0.037 0.963 23 H 0.055 0.945 24 H 0.051 0.949 25 H 0.041 0.959 26 H 0.039 0.961 27 H 0.058 0.942 28 H 0.043 0.957 29 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.554 -5.073 2.203 5.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.070 3.930 3 C -0.542 4.542 4 H 0.070 0.930 5 C -0.137 4.137 6 N -0.527 5.527 7 Si 0.715 3.285 8 H -0.205 1.205 9 H -0.214 1.214 10 H -0.205 1.205 11 C -0.141 4.141 12 C -0.159 4.159 13 C -0.150 4.150 14 C -0.156 4.156 15 C -0.141 4.141 16 H 0.098 0.902 17 H 0.033 0.967 18 H 0.039 0.961 19 H 0.068 0.932 20 H 0.108 0.892 21 H 0.048 0.952 22 H 0.056 0.944 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.473 -4.998 2.027 5.414 hybrid contribution 0.365 0.990 -0.001 1.056 sum 0.838 -4.008 2.026 4.568 Atomic orbital electron populations 1.21897 0.98422 0.97000 1.01640 1.18031 0.92236 0.93113 0.89590 1.21179 1.30776 0.95707 1.06566 0.93039 1.24922 0.95100 0.98067 0.95620 1.69806 1.37055 1.35239 1.10590 0.86744 0.79157 0.85334 0.77223 1.20461 1.21392 1.20459 1.21582 0.97862 0.91661 1.02996 1.21672 1.00447 0.98438 0.95370 1.21484 0.99913 0.97364 0.96237 1.21586 1.00568 0.97314 0.96148 1.21612 0.99121 0.93448 0.99907 0.90205 0.96705 0.96143 0.93185 0.89181 0.95164 0.94387 0.92602 0.93061 0.94033 0.94193 0.92380 0.93810 0.93853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 7.56 37.16 0.28 -2.95 15 2 C 0.07 1.75 0.49 -155.66 -0.08 1.67 15 3 C -0.50 -13.89 8.01 -34.44 -0.28 -14.17 15 4 H 0.05 1.42 7.74 -52.48 -0.41 1.01 15 5 C 0.06 1.74 5.15 -17.82 -0.09 1.65 15 6 N -0.89 -24.86 9.35 55.43 0.52 -24.34 15 7 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 15 8 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 9 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 11 C -0.10 -2.47 4.51 -26.73 -0.12 -2.59 15 12 C -0.12 -2.45 5.65 -26.73 -0.15 -2.60 15 13 C -0.11 -2.03 5.92 -26.73 -0.16 -2.19 15 14 C -0.12 -2.22 5.65 -26.73 -0.15 -2.37 15 15 C -0.10 -2.25 4.67 -26.74 -0.12 -2.38 15 16 H 0.08 2.13 6.07 -51.93 -0.32 1.82 15 17 H 0.01 0.32 4.81 -51.93 -0.25 0.07 15 18 H 0.02 0.48 8.14 -51.93 -0.42 0.06 15 19 H 0.26 6.97 8.31 -40.82 -0.34 6.63 15 20 H 0.09 2.40 6.07 -51.93 -0.32 2.08 15 21 H 0.03 0.73 8.14 -51.93 -0.42 0.30 15 22 H 0.04 0.70 8.14 -51.93 -0.42 0.28 15 23 H 0.06 1.14 6.43 -51.93 -0.33 0.80 15 24 H 0.05 0.91 8.14 -51.93 -0.42 0.49 15 25 H 0.04 0.66 8.14 -51.93 -0.42 0.23 15 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 15 27 H 0.06 1.09 6.43 -51.93 -0.33 0.75 15 28 H 0.04 0.95 8.14 -51.93 -0.42 0.53 15 29 H 0.04 0.93 8.14 -51.93 -0.42 0.51 15 LS Contribution 218.81 15.07 3.30 3.30 Total: -1.00 -27.33 218.81 -6.54 -33.87 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: -4.47 Total: -3.29 kcal Atomic # 6 Polarization: -25.06 SS G_CDS: -0.87 Total: -25.92 kcal Atomic # 7 Polarization: -24.86 SS G_CDS: 0.52 Total: -24.34 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -27.33 -6.54 -33.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167413035.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.605 kcal (2) G-P(sol) polarization free energy of solvation -27.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds