Wall clock time and date at job start Mon Mar 30 2020 02:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 H 1.08003 * 120.00271 * 119.99914 * 3 2 1 5 5 C 1.37886 * 119.99979 * 300.00171 * 3 2 1 6 6 N 1.31509 * 120.00076 * 359.97438 * 5 3 2 7 7 Si 1.86803 * 119.99822 * 180.02562 * 5 3 2 8 8 H 1.48506 * 109.46938 * 60.00034 * 7 5 3 9 9 H 1.48500 * 109.46921 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46946 * 299.99979 * 7 5 3 11 11 C 1.52997 * 109.47127 * 240.00207 * 2 1 3 12 12 C 1.53002 * 109.47143 * 299.99835 * 11 2 1 13 13 C 1.52997 * 109.47092 * 300.00129 * 12 11 2 14 14 C 1.53002 * 109.46978 * 59.99700 * 13 12 11 15 15 C 1.52993 * 109.47392 * 299.99957 * 14 13 12 16 16 H 1.09001 * 109.46801 * 60.00064 * 1 2 3 17 17 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 18 18 H 1.09000 * 109.47050 * 299.99952 * 1 2 3 19 19 H 0.96999 * 120.00100 * 180.02562 * 6 5 3 20 20 H 1.09004 * 109.47261 * 59.99697 * 11 2 1 21 21 H 1.09002 * 109.47153 * 179.97438 * 11 2 1 22 22 H 1.09000 * 109.47312 * 180.02562 * 12 11 2 23 23 H 1.09002 * 109.47067 * 59.99982 * 12 11 2 24 24 H 1.09002 * 109.47045 * 299.99867 * 13 12 11 25 25 H 1.08998 * 109.47624 * 180.02562 * 13 12 11 26 26 H 1.09004 * 109.47006 * 180.02562 * 14 13 12 27 27 H 1.09002 * 109.46838 * 60.00684 * 14 13 12 28 28 H 1.09002 * 109.47722 * 300.00185 * 15 14 13 29 29 H 1.09000 * 109.47250 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 1 2.6532 1.7741 0.8100 5 6 1.6992 2.2698 -1.0341 6 7 0.9435 1.8396 -2.0207 7 14 2.3224 4.0308 -1.0344 8 1 3.8074 4.0303 -1.0349 9 1 1.8277 4.7307 -2.2472 10 1 1.8279 4.7311 0.1781 11 6 2.0401 -0.7212 -1.2492 12 6 1.5301 -2.1637 -1.2493 13 6 2.0401 -2.8850 -0.0001 14 6 1.5301 -2.1637 1.2492 15 6 2.0401 -0.7212 1.2492 16 1 -0.3633 0.5138 -0.8900 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3633 0.5138 0.8900 19 1 0.7094 2.4367 -2.7484 20 1 1.6767 -0.2074 -2.1393 21 1 3.1301 -0.7208 -1.2495 22 1 1.8938 -2.6777 -2.1390 23 1 0.4401 -2.1637 -1.2493 24 1 3.1301 -2.8849 -0.0001 25 1 1.6772 -3.9128 -0.0002 26 1 1.8938 -2.6773 2.1392 27 1 0.4401 -2.1638 1.2492 28 1 3.1301 -0.7211 1.2492 29 1 1.6771 -0.2075 2.1394 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167413035.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:48 Heat of formation + Delta-G solvation = -44.615881 kcal Electronic energy + Delta-G solvation = -10299.797357 eV Core-core repulsion = 8607.014420 eV Total energy + Delta-G solvation = -1692.782936 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.74363 -34.97123 -32.04741 -31.19425 -27.44880 -26.65272 -23.08847 -22.27346 -19.28051 -18.09429 -16.73445 -15.68554 -15.13883 -15.00894 -14.32782 -13.90777 -13.46911 -13.09817 -12.85807 -12.71861 -12.46986 -12.21833 -11.88020 -11.65753 -11.54084 -11.43005 -10.94502 -10.45046 -10.26892 -10.18883 -7.94842 -6.12155 1.42156 1.42395 1.49706 2.46748 3.24944 4.13512 4.24153 4.28258 4.68765 4.85374 4.91165 4.94618 4.98308 4.99698 5.11201 5.28388 5.31111 5.38104 5.53800 5.54490 5.57021 5.71137 5.78978 5.87808 6.30979 6.39409 6.54418 6.97848 7.54789 9.01885 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.075222 B = 0.016442 C = 0.015503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.142208 B = 1702.511457 C = 1805.645618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.058 3.942 3 C -0.529 4.529 4 H 0.041 0.959 5 C 0.020 3.980 6 N -0.905 5.905 7 Si 0.942 3.058 8 H -0.276 1.276 9 H -0.284 1.284 10 H -0.276 1.276 11 C -0.098 4.098 12 C -0.117 4.117 13 C -0.109 4.109 14 C -0.114 4.114 15 C -0.101 4.101 16 H 0.052 0.948 17 H 0.038 0.962 18 H 0.013 0.987 19 H 0.257 0.743 20 H 0.057 0.943 21 H 0.017 0.983 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.038 0.962 29 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.720 -6.165 2.793 6.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.057 3.943 3 C -0.567 4.567 4 H 0.060 0.940 5 C -0.179 4.179 6 N -0.544 5.544 7 Si 0.769 3.231 8 H -0.202 1.202 9 H -0.210 1.210 10 H -0.201 1.201 11 C -0.136 4.136 12 C -0.155 4.155 13 C -0.146 4.146 14 C -0.152 4.152 15 C -0.139 4.139 16 H 0.070 0.930 17 H 0.056 0.944 18 H 0.032 0.968 19 H 0.066 0.934 20 H 0.076 0.924 21 H 0.035 0.965 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.057 0.943 29 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.640 -6.095 2.623 6.666 hybrid contribution 0.320 1.345 -0.190 1.395 sum 0.959 -4.750 2.433 5.423 Atomic orbital electron populations 1.21750 0.98337 0.97920 0.99868 1.18145 0.92344 0.92342 0.91438 1.21548 1.30996 0.97701 1.06438 0.94021 1.25570 0.95402 1.01442 0.95437 1.69948 1.37548 1.36107 1.10786 0.85868 0.78644 0.81334 0.77266 1.20179 1.20955 1.20130 1.21424 0.96883 0.94140 1.01202 1.21599 1.00189 0.96074 0.97621 1.21469 1.00165 0.98624 0.94342 1.21554 1.00564 0.95159 0.97875 1.21532 0.98762 0.95547 0.98042 0.92956 0.94373 0.96773 0.93361 0.92418 0.96456 0.92824 0.92874 0.92732 0.90735 0.91312 0.92308 0.94338 0.94315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.89 7.56 71.98 0.54 -5.34 15 2 C 0.06 2.84 0.49 -52.93 -0.03 2.81 15 3 C -0.53 -29.46 8.01 25.60 0.21 -29.25 15 4 H 0.04 2.33 7.74 -2.91 -0.02 2.31 15 5 C 0.02 1.12 5.15 84.66 0.44 1.55 15 6 N -0.90 -51.43 9.35 21.45 0.20 -51.23 15 7 Si 0.94 44.20 29.54 68.60 2.03 46.22 15 8 H -0.28 -12.75 7.11 99.48 0.71 -12.04 15 9 H -0.28 -13.04 7.11 99.48 0.71 -12.33 15 10 H -0.28 -12.71 7.11 99.48 0.71 -12.01 15 11 C -0.10 -4.70 4.51 30.59 0.14 -4.57 15 12 C -0.12 -4.48 5.65 30.59 0.17 -4.30 15 13 C -0.11 -3.52 5.92 30.59 0.18 -3.33 15 14 C -0.11 -3.88 5.65 30.59 0.17 -3.71 15 15 C -0.10 -4.27 4.67 30.59 0.14 -4.13 15 16 H 0.05 2.82 6.07 -2.39 -0.01 2.80 15 17 H 0.04 1.62 4.81 -2.39 -0.01 1.61 15 18 H 0.01 0.65 8.14 -2.39 -0.02 0.63 15 19 H 0.26 14.07 8.31 -92.71 -0.77 13.30 15 20 H 0.06 3.12 6.07 -2.38 -0.01 3.10 15 21 H 0.02 0.82 8.14 -2.39 -0.02 0.80 15 22 H 0.05 1.86 8.14 -2.39 -0.02 1.84 15 23 H 0.05 2.04 6.43 -2.39 -0.02 2.03 15 24 H 0.05 1.74 8.14 -2.39 -0.02 1.72 15 25 H 0.07 1.98 8.14 -2.39 -0.02 1.96 15 26 H 0.07 1.97 8.14 -2.38 -0.02 1.95 15 27 H 0.06 2.00 6.43 -2.39 -0.02 1.98 15 28 H 0.04 1.63 8.14 -2.39 -0.02 1.61 15 29 H 0.04 1.63 8.14 -2.39 -0.02 1.61 15 Total: -1.00 -57.69 218.81 5.29 -52.40 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: 1.10 Total: 2.88 kcal Atomic # 6 Polarization: -52.24 SS G_CDS: 1.97 Total: -50.27 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: 0.20 Total: -51.23 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -57.69 5.29 -52.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167413035.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.782 kcal (2) G-P(sol) polarization free energy of solvation -57.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds