Wall clock time and date at job start Mon Mar 30 2020 02:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 110.01792 * 2 1 4 4 C 1.50701 * 109.47212 * 58.60679 * 3 2 1 5 5 H 1.07998 * 120.00129 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99861 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99594 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 119.99875 * 0.02562 * 6 4 3 9 9 H 1.48504 * 109.47061 * 90.00257 * 8 6 4 10 10 H 1.48497 * 109.46906 * 209.99430 * 8 6 4 11 11 H 1.48498 * 109.47403 * 329.99876 * 8 6 4 12 12 C 1.54274 * 110.06935 * 121.41800 * 2 1 3 13 13 C 1.54884 * 104.19349 * 95.69471 * 12 2 1 14 14 C 1.54884 * 102.75052 * 37.94246 * 13 12 2 15 15 C 1.53875 * 110.03043 * 238.60669 * 2 1 3 16 16 H 1.08997 * 109.47104 * 60.69903 * 1 2 3 17 17 H 1.08997 * 109.47748 * 180.70185 * 1 2 3 18 18 H 1.09005 * 109.47116 * 300.70023 * 1 2 3 19 19 H 1.09002 * 109.47153 * 298.60681 * 3 2 1 20 20 H 1.09001 * 109.46832 * 178.60872 * 3 2 1 21 21 H 0.97002 * 119.99739 * 180.02562 * 7 6 4 22 22 H 1.09002 * 110.48341 * 214.37489 * 12 2 1 23 23 H 1.08997 * 110.48562 * 337.01764 * 12 2 1 24 24 H 1.09001 * 110.75954 * 279.62316 * 13 12 2 25 25 H 1.09012 * 110.75461 * 156.25335 * 13 12 2 26 26 H 1.09001 * 110.49071 * 203.37639 * 14 13 12 27 27 H 1.09003 * 110.60325 * 80.78993 * 14 13 12 28 28 H 1.09004 * 110.03213 * 359.95104 * 15 2 1 29 29 H 1.08998 * 110.03392 * 121.33855 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4375 0.0000 4 6 1.5303 2.1629 1.2128 5 1 0.8886 1.6498 1.9138 6 6 1.8715 3.4814 1.4281 7 7 1.4151 4.1142 2.4868 8 14 2.9819 4.3686 0.2161 9 1 2.1532 5.0134 -0.8340 10 1 3.7678 5.4053 0.9322 11 1 3.9074 3.3927 -0.4134 12 6 2.0594 -0.7554 1.2366 13 6 2.3297 -2.1897 0.7185 14 6 2.8883 -1.9397 -0.7042 15 6 2.0570 -0.7531 -1.2340 16 1 -0.3633 0.5029 -0.8962 17 1 -0.3634 -1.0275 0.0126 18 1 -0.3633 0.5247 0.8837 19 1 1.7158 1.9474 -0.9022 20 1 3.1434 1.4272 0.0250 21 1 1.6548 5.0418 2.6381 22 1 2.9819 -0.2994 1.5961 23 1 1.3074 -0.7701 2.0255 24 1 1.4051 -2.7654 0.6748 25 1 3.0698 -2.6924 1.3413 26 1 2.7414 -2.8187 -1.3318 27 1 3.9450 -1.6758 -0.6605 28 1 1.2228 -1.1193 -1.8325 29 1 2.6853 -0.0942 -1.8334 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000204894888.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:44 Heat of formation + Delta-G solvation = -32.828313 kcal Electronic energy + Delta-G solvation = -9992.771960 eV Core-core repulsion = 8300.500171 eV Total energy + Delta-G solvation = -1692.271789 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.28356 -32.98601 -31.13062 -28.14165 -27.43720 -24.58832 -21.81806 -20.16823 -17.67839 -16.60567 -15.01067 -14.38411 -13.89153 -13.16000 -12.83014 -12.51314 -12.13085 -11.76903 -11.14169 -10.98381 -10.68243 -10.51214 -10.39694 -10.18695 -9.95095 -9.67173 -9.54602 -9.13761 -8.87906 -8.46392 -5.97194 -3.93033 3.34440 3.41889 3.46213 4.51244 5.19109 5.29445 5.34082 5.37555 5.96896 6.04052 6.09443 6.15335 6.18535 6.25748 6.37103 6.46995 6.56497 6.70474 6.76730 6.89670 7.03684 7.16647 7.23895 7.38675 7.55197 7.89179 8.63721 9.09378 9.66529 11.16215 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.062703 B = 0.015084 C = 0.014069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.440861 B = 1855.791394 C = 1989.781430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.052 4.052 3 C -0.003 4.003 4 C -0.508 4.508 5 H 0.076 0.924 6 C 0.063 3.937 7 N -0.907 5.907 8 Si 0.876 3.124 9 H -0.279 1.279 10 H -0.289 1.289 11 H -0.266 1.266 12 C -0.099 4.099 13 C -0.128 4.128 14 C -0.122 4.122 15 C -0.120 4.120 16 H 0.042 0.958 17 H 0.032 0.968 18 H 0.066 0.934 19 H 0.008 0.992 20 H 0.014 0.986 21 H 0.261 0.739 22 H 0.067 0.933 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.779 -9.199 -5.626 10.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.052 4.052 3 C -0.040 4.040 4 C -0.546 4.546 5 H 0.094 0.906 6 C -0.137 4.137 7 N -0.547 5.547 8 Si 0.704 3.296 9 H -0.205 1.205 10 H -0.216 1.216 11 H -0.191 1.191 12 C -0.137 4.137 13 C -0.165 4.165 14 C -0.160 4.160 15 C -0.158 4.158 16 H 0.061 0.939 17 H 0.051 0.949 18 H 0.085 0.915 19 H 0.027 0.973 20 H 0.033 0.967 21 H 0.071 0.929 22 H 0.085 0.915 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.782 -9.022 -5.539 10.736 hybrid contribution 0.571 0.694 -0.593 1.077 sum 2.353 -8.328 -6.132 10.607 Atomic orbital electron populations 1.21800 0.95310 0.98935 1.02213 1.21027 0.95043 0.96516 0.92651 1.19724 0.95809 0.91393 0.97102 1.21186 1.30059 0.96024 1.07284 0.90636 1.25036 0.95903 0.97600 0.95169 1.69917 1.45874 1.11199 1.27680 0.86837 0.81527 0.79610 0.81654 1.20477 1.21567 1.19122 1.22312 1.01228 0.92767 0.97387 1.22545 0.99733 0.98204 0.96068 1.22319 0.99450 0.97674 0.96508 1.22358 0.98719 0.96490 0.98208 0.93888 0.94914 0.91469 0.97337 0.96741 0.92940 0.91464 0.92170 0.92337 0.92612 0.92890 0.92211 0.92750 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 7.88 37.16 0.29 -2.14 15 2 C -0.05 -1.05 0.66 -153.39 -0.10 -1.15 15 3 C 0.00 -0.07 2.75 -27.88 -0.08 -0.15 15 4 C -0.51 -14.33 8.43 -34.44 -0.29 -14.62 15 5 H 0.08 2.27 6.70 -52.49 -0.35 1.92 15 6 C 0.06 1.85 5.47 -17.82 -0.10 1.76 15 7 N -0.91 -28.19 13.96 55.43 0.77 -27.42 15 8 Si 0.88 22.13 27.47 -169.99 -4.67 17.46 15 9 H -0.28 -6.94 7.11 56.52 0.40 -6.54 15 10 H -0.29 -7.26 7.11 56.52 0.40 -6.86 15 11 H -0.27 -6.51 6.54 56.52 0.37 -6.14 15 12 C -0.10 -1.90 5.18 -25.07 -0.13 -2.03 15 13 C -0.13 -1.97 6.91 -24.74 -0.17 -2.15 15 14 C -0.12 -1.83 6.83 -25.07 -0.17 -2.00 15 15 C -0.12 -2.06 6.11 -25.61 -0.16 -2.21 15 16 H 0.04 0.81 8.14 -51.93 -0.42 0.38 15 17 H 0.03 0.55 8.14 -51.93 -0.42 0.12 15 18 H 0.07 1.45 6.56 -51.93 -0.34 1.11 15 19 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 15 20 H 0.01 0.36 7.17 -51.93 -0.37 -0.02 15 21 H 0.26 7.63 8.31 -40.82 -0.34 7.29 15 22 H 0.07 1.38 7.84 -51.93 -0.41 0.97 15 23 H 0.06 1.18 7.84 -51.93 -0.41 0.77 15 24 H 0.06 0.85 8.14 -51.93 -0.42 0.42 15 25 H 0.06 0.78 8.14 -51.92 -0.42 0.36 15 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 15 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 15 28 H 0.05 0.86 7.67 -51.93 -0.40 0.46 15 29 H 0.06 1.00 7.67 -51.93 -0.40 0.60 15 LS Contribution 228.57 15.07 3.44 3.44 Total: -1.00 -29.71 228.57 -6.12 -35.83 By element: Atomic # 1 Polarization: 0.16 SS G_CDS: -4.77 Total: -4.61 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: -0.90 Total: -24.70 kcal Atomic # 7 Polarization: -28.19 SS G_CDS: 0.77 Total: -27.42 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -29.71 -6.12 -35.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000204894888.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.002 kcal (2) G-P(sol) polarization free energy of solvation -29.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds