Wall clock time and date at job start Mon Mar 30 2020 02:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 110.01792 * 2 1 4 4 C 1.50701 * 109.47212 * 58.60679 * 3 2 1 5 5 H 1.07998 * 120.00129 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99861 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99594 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 119.99875 * 0.02562 * 6 4 3 9 9 H 1.48504 * 109.47061 * 90.00257 * 8 6 4 10 10 H 1.48497 * 109.46906 * 209.99430 * 8 6 4 11 11 H 1.48498 * 109.47403 * 329.99876 * 8 6 4 12 12 C 1.54274 * 110.06935 * 121.41800 * 2 1 3 13 13 C 1.54884 * 104.19349 * 95.69471 * 12 2 1 14 14 C 1.54884 * 102.75052 * 37.94246 * 13 12 2 15 15 C 1.53875 * 110.03043 * 238.60669 * 2 1 3 16 16 H 1.08997 * 109.47104 * 60.69903 * 1 2 3 17 17 H 1.08997 * 109.47748 * 180.70185 * 1 2 3 18 18 H 1.09005 * 109.47116 * 300.70023 * 1 2 3 19 19 H 1.09002 * 109.47153 * 298.60681 * 3 2 1 20 20 H 1.09001 * 109.46832 * 178.60872 * 3 2 1 21 21 H 0.97002 * 119.99739 * 180.02562 * 7 6 4 22 22 H 1.09002 * 110.48341 * 214.37489 * 12 2 1 23 23 H 1.08997 * 110.48562 * 337.01764 * 12 2 1 24 24 H 1.09001 * 110.75954 * 279.62316 * 13 12 2 25 25 H 1.09012 * 110.75461 * 156.25335 * 13 12 2 26 26 H 1.09001 * 110.49071 * 203.37639 * 14 13 12 27 27 H 1.09003 * 110.60325 * 80.78993 * 14 13 12 28 28 H 1.09004 * 110.03213 * 359.95104 * 15 2 1 29 29 H 1.08998 * 110.03392 * 121.33855 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4375 0.0000 4 6 1.5303 2.1629 1.2128 5 1 0.8886 1.6498 1.9138 6 6 1.8715 3.4814 1.4281 7 7 1.4151 4.1142 2.4868 8 14 2.9819 4.3686 0.2161 9 1 2.1532 5.0134 -0.8340 10 1 3.7678 5.4053 0.9322 11 1 3.9074 3.3927 -0.4134 12 6 2.0594 -0.7554 1.2366 13 6 2.3297 -2.1897 0.7185 14 6 2.8883 -1.9397 -0.7042 15 6 2.0570 -0.7531 -1.2340 16 1 -0.3633 0.5029 -0.8962 17 1 -0.3634 -1.0275 0.0126 18 1 -0.3633 0.5247 0.8837 19 1 1.7158 1.9474 -0.9022 20 1 3.1434 1.4272 0.0250 21 1 1.6548 5.0418 2.6381 22 1 2.9819 -0.2994 1.5961 23 1 1.3074 -0.7701 2.0255 24 1 1.4051 -2.7654 0.6748 25 1 3.0698 -2.6924 1.3413 26 1 2.7414 -2.8187 -1.3318 27 1 3.9450 -1.6758 -0.6605 28 1 1.2228 -1.1193 -1.8325 29 1 2.6853 -0.0942 -1.8334 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000204894888.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:44 Heat of formation + Delta-G solvation = -50.242493 kcal Electronic energy + Delta-G solvation = -9993.527096 eV Core-core repulsion = 8300.500171 eV Total energy + Delta-G solvation = -1693.026925 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.77975 -35.02008 -32.89163 -29.54394 -29.31035 -26.22491 -23.72917 -21.45388 -19.29535 -18.76271 -16.62241 -15.91843 -15.73142 -14.88497 -14.35627 -14.29613 -13.95152 -13.27675 -12.97273 -12.79192 -12.37619 -11.95681 -11.82588 -11.80564 -11.61087 -11.25660 -11.15125 -10.88569 -10.82072 -10.70077 -8.24051 -6.24519 1.33973 1.35668 1.47401 2.37935 3.10851 3.84300 3.94379 4.01949 4.57850 4.63837 4.65960 4.71303 4.84618 4.93430 5.03511 5.10441 5.14535 5.23706 5.25286 5.34601 5.40759 5.55686 5.60193 5.63736 5.79202 5.84298 6.39554 6.82909 7.38397 8.92534 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.062703 B = 0.015084 C = 0.014069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.440861 B = 1855.791394 C = 1989.781430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.060 4.060 3 C -0.001 4.001 4 C -0.506 4.506 5 H 0.040 0.960 6 C -0.001 4.001 7 N -0.955 5.955 8 Si 0.943 3.057 9 H -0.269 1.269 10 H -0.286 1.286 11 H -0.251 1.251 12 C -0.104 4.104 13 C -0.118 4.118 14 C -0.117 4.117 15 C -0.117 4.117 16 H 0.046 0.954 17 H 0.062 0.938 18 H 0.032 0.968 19 H 0.009 0.991 20 H 0.011 0.989 21 H 0.263 0.737 22 H 0.043 0.957 23 H 0.042 0.958 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.658 -10.687 -7.654 13.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.060 4.060 3 C -0.038 4.038 4 C -0.544 4.544 5 H 0.058 0.942 6 C -0.197 4.197 7 N -0.597 5.597 8 Si 0.768 3.232 9 H -0.195 1.195 10 H -0.212 1.212 11 H -0.174 1.174 12 C -0.142 4.142 13 C -0.155 4.155 14 C -0.154 4.154 15 C -0.155 4.155 16 H 0.065 0.935 17 H 0.081 0.919 18 H 0.051 0.949 19 H 0.028 0.972 20 H 0.029 0.971 21 H 0.072 0.928 22 H 0.062 0.938 23 H 0.061 0.939 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.102 0.898 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.662 -10.529 -7.578 13.243 hybrid contribution 0.230 1.135 0.116 1.163 sum 2.892 -9.395 -7.462 12.342 Atomic orbital electron populations 1.21734 0.95009 1.00366 1.00673 1.21084 0.95401 0.94498 0.95019 1.19700 0.95405 0.93869 0.94854 1.21468 1.28874 0.96162 1.07943 0.94158 1.25972 0.97798 0.98749 0.97176 1.70071 1.47920 1.11722 1.29983 0.85758 0.79722 0.78503 0.79267 1.19463 1.21212 1.17449 1.22280 0.99502 0.95637 0.96773 1.22501 1.01062 0.95433 0.96523 1.22318 0.99020 0.97838 0.96243 1.22307 0.99650 0.96926 0.96573 0.93504 0.91917 0.94930 0.97240 0.97066 0.92846 0.93787 0.93866 0.90816 0.91000 0.89831 0.92100 0.90843 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.58 7.88 71.98 0.57 -4.01 15 2 C -0.06 -2.34 0.66 -51.46 -0.03 -2.38 15 3 C 0.00 -0.05 2.75 29.85 0.08 0.03 15 4 C -0.51 -29.35 8.43 25.60 0.22 -29.14 15 5 H 0.04 2.56 6.70 -2.91 -0.02 2.54 15 6 C 0.00 -0.08 5.47 84.66 0.46 0.38 15 7 N -0.95 -61.14 13.96 21.45 0.30 -60.84 15 8 Si 0.94 45.69 27.47 68.60 1.88 47.58 15 9 H -0.27 -12.57 7.11 99.48 0.71 -11.87 15 10 H -0.29 -13.62 7.11 99.48 0.71 -12.92 15 11 H -0.25 -11.40 6.54 99.48 0.65 -10.75 15 12 C -0.10 -3.93 5.18 31.67 0.16 -3.77 15 13 C -0.12 -3.26 6.91 31.88 0.22 -3.04 15 14 C -0.12 -3.02 6.83 31.67 0.22 -2.81 15 15 C -0.12 -3.61 6.11 31.32 0.19 -3.42 15 16 H 0.05 1.70 8.14 -2.39 -0.02 1.68 15 17 H 0.06 1.97 8.14 -2.39 -0.02 1.95 15 18 H 0.03 1.43 6.56 -2.38 -0.02 1.41 15 19 H 0.01 0.44 7.57 -2.39 -0.02 0.43 15 20 H 0.01 0.54 7.17 -2.39 -0.02 0.52 15 21 H 0.26 15.77 8.31 -92.71 -0.77 15.00 15 22 H 0.04 1.82 7.84 -2.39 -0.02 1.80 15 23 H 0.04 1.72 7.84 -2.39 -0.02 1.70 15 24 H 0.07 1.84 8.14 -2.39 -0.02 1.82 15 25 H 0.07 1.77 8.14 -2.38 -0.02 1.75 15 26 H 0.08 1.71 8.14 -2.39 -0.02 1.69 15 27 H 0.06 1.57 8.14 -2.39 -0.02 1.55 15 28 H 0.07 1.99 7.67 -2.39 -0.02 1.98 15 29 H 0.05 1.73 7.67 -2.39 -0.02 1.71 15 Total: -1.00 -64.72 228.57 5.30 -59.41 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: 1.03 Total: 2.00 kcal Atomic # 6 Polarization: -50.23 SS G_CDS: 2.09 Total: -48.14 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: 0.30 Total: -60.84 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.88 Total: 47.58 kcal Total: -64.72 5.30 -59.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000204894888.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.170 kcal (2) G-P(sol) polarization free energy of solvation -64.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds