Wall clock time and date at job start Mon Mar 30 2020 01:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00069 * 2 1 4 4 H 1.48505 * 109.46863 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47147 * 240.00359 * 3 2 1 6 6 H 1.48495 * 109.47091 * 120.00037 * 3 2 1 7 7 C 1.37878 * 120.00164 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00050 * 18.34090 * 7 2 1 9 9 C 1.50698 * 120.00020 * 198.35189 * 7 2 1 10 10 H 1.09007 * 109.63841 * 305.67045 * 9 7 2 11 11 C 1.53024 * 109.64465 * 66.08843 * 9 7 2 12 12 C 1.50071 * 110.14627 * 169.11999 * 11 9 7 13 13 C 1.29444 * 124.07493 * 342.87264 * 12 11 9 14 14 C 1.50066 * 124.07539 * 0.49432 * 13 12 11 15 15 C 1.52974 * 110.28795 * 342.97168 * 14 13 12 16 16 H 1.08997 * 109.47087 * 289.54516 * 15 14 13 17 17 O 1.42899 * 109.78885 * 168.92362 * 15 14 13 18 18 H 0.97002 * 120.00063 * 174.66034 * 1 2 3 19 19 H 1.08994 * 109.36102 * 289.33291 * 11 9 7 20 20 H 1.09000 * 109.35481 * 48.91566 * 11 9 7 21 21 H 1.08004 * 117.95982 * 162.84645 * 12 11 9 22 22 H 1.07999 * 117.95934 * 180.46467 * 13 12 11 23 23 H 1.09002 * 109.35761 * 103.05387 * 14 13 12 24 24 H 1.09003 * 109.35320 * 222.77291 * 14 13 12 25 25 H 0.96695 * 114.00206 * 60.94143 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6965 -1.2125 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 1.5058 -2.1054 -0.2952 9 6 3.4541 -1.2274 0.4104 10 1 4.0207 -0.5128 -0.1868 11 6 3.5768 -0.8701 1.8932 12 6 4.9676 -1.1542 2.3800 13 6 5.8135 -1.9109 1.7574 14 6 5.5251 -2.6012 0.4565 15 6 4.0178 -2.6381 0.1983 16 1 3.5464 -3.3297 0.8965 17 8 3.7671 -3.0588 -1.1441 18 1 -0.4850 -0.8364 -0.0782 19 1 3.3555 0.1885 2.0293 20 1 2.8648 -1.4626 2.4677 21 1 5.2826 -0.6987 3.3072 22 1 6.7874 -2.0539 2.2016 23 1 6.0144 -2.0621 -0.3548 24 1 5.9087 -3.6207 0.4958 25 1 4.0981 -3.9444 -1.3471 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000210114372.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:22 Heat of formation + Delta-G solvation = -71.425501 kcal Electronic energy + Delta-G solvation = -9813.612274 eV Core-core repulsion = 7983.833691 eV Total energy + Delta-G solvation = -1829.778583 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.88093 -36.46544 -34.97758 -31.90431 -30.46503 -26.36306 -24.01634 -21.88033 -19.68338 -18.74808 -18.19116 -16.67740 -15.83132 -15.38517 -14.55816 -14.38775 -14.11202 -13.68866 -13.54065 -13.12562 -12.50192 -12.17384 -11.84164 -11.73984 -11.10760 -10.95633 -10.68660 -10.28489 -9.78038 -8.71492 -6.30332 1.39705 1.48697 1.52243 1.71691 2.48668 3.07292 3.56207 3.95898 4.03866 4.31519 4.43559 4.58694 4.66643 4.78040 4.98385 5.06601 5.15346 5.28875 5.61088 5.82432 6.05971 6.10946 6.13647 6.61976 7.09472 7.45879 8.66233 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.050751 B = 0.020630 C = 0.017026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.582334 B = 1356.893945 C = 1644.120370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.028 4.028 3 Si 1.085 2.915 4 H -0.288 1.288 5 H -0.273 1.273 6 H -0.236 1.236 7 C -0.585 4.585 8 H 0.012 0.988 9 C 0.020 3.980 10 H 0.021 0.979 11 C -0.098 4.098 12 C -0.162 4.162 13 C -0.157 4.157 14 C -0.116 4.116 15 C 0.116 3.884 16 H 0.033 0.967 17 O -0.576 6.576 18 H 0.248 0.752 19 H 0.066 0.934 20 H 0.053 0.947 21 H 0.123 0.877 22 H 0.135 0.865 23 H 0.078 0.922 24 H 0.095 0.905 25 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.329 -2.911 3.685 14.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.225 4.225 3 Si 0.907 3.093 4 H -0.214 1.214 5 H -0.198 1.198 6 H -0.161 1.161 7 C -0.623 4.623 8 H 0.031 0.969 9 C 0.001 3.999 10 H 0.039 0.961 11 C -0.135 4.135 12 C -0.180 4.180 13 C -0.175 4.175 14 C -0.153 4.153 15 C 0.057 3.943 16 H 0.051 0.949 17 O -0.382 6.382 18 H 0.057 0.943 19 H 0.084 0.916 20 H 0.071 0.929 21 H 0.141 0.859 22 H 0.153 0.847 23 H 0.096 0.904 24 H 0.113 0.887 25 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 12.857 -0.703 3.733 13.406 hybrid contribution -0.405 -2.516 -0.278 2.563 sum 12.451 -3.219 3.455 13.316 Atomic orbital electron populations 1.70995 1.08196 1.29689 1.49142 1.27263 0.96170 1.06339 0.92694 0.83568 0.74853 0.71602 0.79308 1.21376 1.19828 1.16078 1.22089 0.97339 0.94579 1.48286 0.96931 1.19063 0.94587 0.93181 0.93089 0.96140 1.20885 0.94731 1.01257 0.96614 1.22389 0.95195 0.99622 1.00815 1.22134 1.00237 0.98658 0.96499 1.21179 0.95341 1.01854 0.96946 1.21748 0.94191 0.96048 0.82299 0.94903 1.86701 1.83453 1.37635 1.30456 0.94272 0.91612 0.92897 0.85870 0.84685 0.90393 0.88714 0.77384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.88 13.70 21.45 0.29 -61.58 15 2 C -0.03 -1.72 5.34 84.65 0.45 -1.27 15 3 Si 1.09 52.24 26.55 68.60 1.82 54.06 15 4 H -0.29 -13.81 7.11 99.48 0.71 -13.11 15 5 H -0.27 -12.53 7.11 99.48 0.71 -11.82 15 6 H -0.24 -9.88 5.46 99.48 0.54 -9.34 15 7 C -0.59 -35.42 8.35 25.60 0.21 -35.21 15 8 H 0.01 0.84 7.85 -2.91 -0.02 0.82 15 9 C 0.02 0.98 1.51 -11.40 -0.02 0.96 15 10 H 0.02 1.03 6.78 -2.38 -0.02 1.01 15 11 C -0.10 -4.19 5.10 29.66 0.15 -4.04 15 12 C -0.16 -5.31 9.81 27.04 0.27 -5.04 15 13 C -0.16 -4.51 9.81 27.04 0.27 -4.25 15 14 C -0.12 -3.54 5.75 29.64 0.17 -3.37 15 15 C 0.12 4.79 3.01 30.72 0.09 4.89 15 16 H 0.03 1.40 8.13 -2.39 -0.02 1.38 15 17 O -0.58 -24.41 12.69 -148.98 -1.89 -26.30 15 18 H 0.25 16.60 8.73 -92.71 -0.81 15.79 15 19 H 0.07 2.87 4.97 -2.39 -0.01 2.86 15 20 H 0.05 2.40 8.10 -2.39 -0.02 2.38 15 21 H 0.12 3.29 8.06 -2.91 -0.02 3.26 15 22 H 0.14 2.87 8.06 -2.91 -0.02 2.84 15 23 H 0.08 2.37 8.14 -2.39 -0.02 2.35 15 24 H 0.09 2.24 8.14 -2.39 -0.02 2.22 15 25 H 0.38 11.12 9.09 -74.06 -0.67 10.44 15 Total: -1.00 -72.19 207.33 2.12 -70.07 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 0.30 Total: 11.10 kcal Atomic # 6 Polarization: -48.93 SS G_CDS: 1.59 Total: -47.34 kcal Atomic # 7 Polarization: -61.88 SS G_CDS: 0.29 Total: -61.58 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -1.89 Total: -26.30 kcal Atomic # 14 Polarization: 52.24 SS G_CDS: 1.82 Total: 54.06 kcal Total: -72.19 2.12 -70.07 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000210114372.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.357 kcal (2) G-P(sol) polarization free energy of solvation -72.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds