Wall clock time and date at job start Mon Mar 30 2020 01:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00323 * 2 1 4 4 H 1.48499 * 109.46575 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47126 * 119.99565 * 3 2 1 6 6 H 1.48498 * 109.47096 * 239.99638 * 3 2 1 7 7 C 1.37886 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99627 * 18.35406 * 7 2 1 9 9 C 1.50693 * 119.99953 * 198.34981 * 7 2 1 10 10 H 1.09001 * 109.64664 * 305.66365 * 9 7 2 11 11 C 1.53020 * 109.64326 * 66.08778 * 9 7 2 12 12 C 1.50069 * 110.15038 * 169.11825 * 11 9 7 13 13 C 1.29440 * 124.07286 * 342.87046 * 12 11 9 14 14 C 1.50067 * 124.08036 * 0.48759 * 13 12 11 15 15 C 1.52974 * 110.28249 * 342.98232 * 14 13 12 16 16 H 1.09008 * 109.79322 * 168.91756 * 15 14 13 17 17 O 1.42900 * 109.47467 * 289.53043 * 15 14 13 18 18 H 0.97004 * 119.99894 * 174.67225 * 1 2 3 19 19 H 1.09001 * 109.36006 * 289.32760 * 11 9 7 20 20 H 1.09004 * 109.35743 * 49.05109 * 11 9 7 21 21 H 1.08003 * 117.96512 * 162.89119 * 12 11 9 22 22 H 1.08006 * 117.96054 * 180.46822 * 13 12 11 23 23 H 1.09004 * 109.35864 * 103.05460 * 14 13 12 24 24 H 1.08995 * 109.36079 * 222.78100 * 14 13 12 25 25 H 0.96702 * 114.00267 * 298.87627 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1030 1.6963 -1.2124 7 6 2.0045 -1.1941 0.0005 8 1 1.5056 -2.1057 -0.2936 9 6 3.4540 -1.2272 0.4114 10 1 4.0207 -0.5133 -0.1864 11 6 3.5767 -0.8685 1.8939 12 6 4.9675 -1.1522 2.3810 13 6 5.8132 -1.9095 1.7592 14 6 5.5250 -2.6013 0.4591 15 6 4.0176 -2.6382 0.2008 16 1 3.8263 -2.9601 -0.8229 17 8 3.3994 -3.5441 1.1169 18 1 -0.4850 -0.8365 -0.0780 19 1 3.3555 0.1903 2.0290 20 1 2.8664 -1.4622 2.4693 21 1 5.2822 -0.6965 3.3082 22 1 6.7872 -2.0523 2.2037 23 1 6.0143 -2.0631 -0.3528 24 1 5.9083 -3.6208 0.4994 25 1 3.7103 -4.4564 1.0382 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000210114403.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:24 Heat of formation + Delta-G solvation = -69.447706 kcal Electronic energy + Delta-G solvation = -9877.730693 eV Core-core repulsion = 8048.037874 eV Total energy + Delta-G solvation = -1829.692820 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.96846 -36.00360 -34.94632 -31.88042 -30.75311 -26.29367 -23.99280 -21.84677 -19.66006 -19.23844 -17.30009 -16.49184 -15.98774 -15.33357 -14.98243 -14.32996 -14.04228 -13.88727 -13.14180 -12.95524 -12.65704 -12.06864 -11.84239 -11.65065 -11.24351 -10.92950 -10.48527 -10.29941 -9.70604 -8.72340 -6.32202 1.43577 1.52515 1.55727 1.72476 2.50500 3.06382 3.67335 3.97348 4.02328 4.35911 4.53588 4.70769 4.73223 4.82884 4.93446 5.03463 5.19138 5.35728 5.62461 5.92277 6.04022 6.14949 6.20871 6.60032 7.11992 7.44991 8.65072 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.057579 B = 0.020083 C = 0.017073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.167971 B = 1393.910195 C = 1639.652000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.028 4.028 3 Si 1.085 2.915 4 H -0.290 1.290 5 H -0.243 1.243 6 H -0.259 1.259 7 C -0.592 4.592 8 H 0.010 0.990 9 C 0.020 3.980 10 H 0.039 0.961 11 C -0.088 4.088 12 C -0.161 4.161 13 C -0.157 4.157 14 C -0.117 4.117 15 C 0.114 3.886 16 H 0.038 0.962 17 O -0.574 6.574 18 H 0.248 0.752 19 H 0.055 0.945 20 H 0.040 0.960 21 H 0.112 0.888 22 H 0.128 0.872 23 H 0.090 0.910 24 H 0.095 0.905 25 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.638 -2.654 1.977 14.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.225 4.225 3 Si 0.906 3.094 4 H -0.216 1.216 5 H -0.168 1.168 6 H -0.184 1.184 7 C -0.630 4.630 8 H 0.028 0.972 9 C 0.001 3.999 10 H 0.057 0.943 11 C -0.126 4.126 12 C -0.179 4.179 13 C -0.174 4.174 14 C -0.153 4.153 15 C 0.056 3.944 16 H 0.056 0.944 17 O -0.380 6.380 18 H 0.057 0.943 19 H 0.073 0.927 20 H 0.059 0.941 21 H 0.130 0.870 22 H 0.146 0.854 23 H 0.108 0.892 24 H 0.113 0.887 25 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 13.132 -0.492 2.228 13.328 hybrid contribution -0.445 -2.472 -0.334 2.534 sum 12.686 -2.964 1.894 13.165 Atomic orbital electron populations 1.70989 1.08327 1.29697 1.48957 1.27346 0.96128 1.06537 0.92447 0.83572 0.74921 0.71340 0.79547 1.21587 1.16781 1.18392 1.22158 0.97817 0.94223 1.48767 0.97188 1.19092 0.94498 0.92976 0.93296 0.94297 1.20699 0.94368 0.99695 0.97808 1.22298 0.95294 0.99942 1.00348 1.22092 0.99701 0.98408 0.97239 1.21207 0.95325 1.01896 0.96922 1.21805 0.91419 0.90547 0.90665 0.94369 1.86651 1.68506 1.21701 1.61133 0.94308 0.92708 0.94111 0.87006 0.85420 0.89221 0.88702 0.77609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.86 13.69 21.45 0.29 -61.57 15 2 C -0.03 -1.70 5.34 84.66 0.45 -1.24 15 3 Si 1.09 51.24 26.55 68.60 1.82 53.07 15 4 H -0.29 -13.78 7.11 99.48 0.71 -13.07 15 5 H -0.24 -10.27 5.45 99.48 0.54 -9.73 15 6 H -0.26 -11.12 7.11 99.48 0.71 -10.42 15 7 C -0.59 -35.50 8.64 25.60 0.22 -35.28 15 8 H 0.01 0.66 8.00 -2.91 -0.02 0.63 15 9 C 0.02 0.98 1.56 -11.40 -0.02 0.97 15 10 H 0.04 1.82 6.78 -2.39 -0.02 1.80 15 11 C -0.09 -4.04 4.69 29.66 0.14 -3.90 15 12 C -0.16 -5.72 9.76 27.04 0.26 -5.45 15 13 C -0.16 -4.72 9.71 27.04 0.26 -4.45 15 14 C -0.12 -3.45 5.76 29.64 0.17 -3.28 15 15 C 0.11 4.62 3.17 30.72 0.10 4.72 15 16 H 0.04 1.57 8.14 -2.38 -0.02 1.55 15 17 O -0.57 -23.71 12.19 -148.98 -1.82 -25.52 15 18 H 0.25 16.63 8.73 -92.71 -0.81 15.82 15 19 H 0.05 2.53 4.96 -2.39 -0.01 2.52 15 20 H 0.04 2.10 7.80 -2.38 -0.02 2.08 15 21 H 0.11 3.40 8.06 -2.91 -0.02 3.37 15 22 H 0.13 2.95 8.06 -2.91 -0.02 2.92 15 23 H 0.09 2.41 8.14 -2.39 -0.02 2.39 15 24 H 0.09 2.19 8.14 -2.39 -0.02 2.18 15 25 H 0.38 11.01 9.09 -74.06 -0.67 10.33 15 Total: -1.00 -71.76 206.64 2.19 -69.57 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 0.30 Total: 12.39 kcal Atomic # 6 Polarization: -49.52 SS G_CDS: 1.59 Total: -47.93 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: 0.29 Total: -61.57 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -1.82 Total: -25.52 kcal Atomic # 14 Polarization: 51.24 SS G_CDS: 1.82 Total: 53.07 kcal Total: -71.76 2.19 -69.57 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000210114403.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.122 kcal (2) G-P(sol) polarization free energy of solvation -71.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds