Wall clock time and date at job start Mon Mar 30 2020 02:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 110.01720 * 2 1 4 4 C 1.54264 * 110.02957 * 121.39410 * 2 1 3 5 5 C 1.54892 * 104.19651 * 95.67494 * 4 2 1 6 6 C 1.54891 * 102.74959 * 37.93955 * 5 4 2 7 7 H 1.09002 * 110.48740 * 80.73781 * 6 5 4 8 8 C 1.50696 * 110.48578 * 203.24763 * 6 5 4 9 9 H 1.08007 * 119.99848 * 116.75592 * 8 6 5 10 10 C 1.37876 * 120.00090 * 296.75891 * 8 6 5 11 11 N 1.31514 * 120.00181 * 359.97438 * 10 8 6 12 12 Si 1.86802 * 120.00132 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.46988 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47385 * 119.99471 * 12 10 8 15 15 H 1.48497 * 109.47102 * 239.99925 * 12 10 8 16 16 C 1.54224 * 110.00174 * 238.58823 * 2 1 3 17 17 H 1.08997 * 109.47347 * 300.06387 * 1 2 3 18 18 H 1.09008 * 109.47325 * 60.06154 * 1 2 3 19 19 H 1.08998 * 109.47206 * 180.02562 * 1 2 3 20 20 H 1.08996 * 109.46759 * 179.97438 * 3 2 1 21 21 H 1.09005 * 109.46948 * 299.93629 * 3 2 1 22 22 H 1.08999 * 109.46866 * 59.93890 * 3 2 1 23 23 H 1.08993 * 110.49070 * 336.99316 * 4 2 1 24 24 H 1.09006 * 110.48110 * 214.34709 * 4 2 1 25 25 H 1.09000 * 110.75513 * 279.62815 * 5 4 2 26 26 H 1.09002 * 110.91731 * 156.32611 * 5 4 2 27 27 H 0.96994 * 119.99898 * 180.02562 * 11 10 8 28 28 H 1.08998 * 110.14251 * 121.44344 * 16 2 1 29 29 H 1.09004 * 110.08793 * 359.90589 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0584 -0.7550 1.2372 5 6 2.3280 -2.1899 0.7200 6 6 2.8874 -1.9410 -0.7028 7 1 3.9440 -1.6770 -0.6565 8 6 2.6866 -3.1578 -1.5687 9 1 2.0543 -3.1004 -2.4425 10 6 3.3099 -4.3444 -1.2456 11 7 4.0802 -4.4143 -0.1820 12 14 3.0616 -5.8526 -2.3195 13 1 2.1568 -5.5137 -3.4473 14 1 4.3725 -6.3013 -2.8537 15 1 2.4574 -6.9419 -1.5110 16 6 2.0575 -0.7553 -1.2368 17 1 -0.3634 0.5148 0.8894 18 1 -0.3634 0.5129 -0.8906 19 1 -0.3633 -1.0276 0.0005 20 1 3.1436 1.4271 0.0005 21 1 1.6962 1.9545 -0.8906 22 1 1.6944 1.9551 0.8894 23 1 1.3061 -0.7688 2.0258 24 1 2.9811 -0.2994 1.5967 25 1 1.4030 -2.7649 0.6762 26 1 3.0663 -2.6956 1.3423 27 1 4.5190 -5.2489 0.0451 28 1 2.6875 -0.0989 -1.8370 29 1 1.2236 -1.1226 -1.8350 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211695976.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:05 Heat of formation + Delta-G solvation = -50.971333 kcal Electronic energy + Delta-G solvation = -9995.147999 eV Core-core repulsion = 8302.089469 eV Total energy + Delta-G solvation = -1693.058530 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.65560 -35.08791 -32.32818 -29.81757 -28.04596 -26.87711 -24.31978 -21.15360 -19.37946 -18.38211 -16.56558 -15.97710 -15.36400 -14.49441 -14.31817 -14.08728 -13.63176 -13.16768 -12.97084 -12.76097 -12.60037 -12.28558 -12.23444 -11.50107 -11.29818 -11.21901 -11.09067 -10.81907 -10.75376 -10.42923 -8.10916 -6.20865 1.38870 1.40067 1.52029 2.43287 3.18822 3.96025 4.04828 4.08471 4.66836 4.75435 4.78954 4.81591 4.85936 4.94643 5.06360 5.13336 5.24093 5.26909 5.34488 5.46145 5.48942 5.60590 5.68962 5.78985 5.96861 6.03613 6.41828 6.91010 7.46255 8.97895 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.079751 B = 0.013565 C = 0.012933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 351.009864 B = 2063.661544 C = 2164.525960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.072 4.072 3 C -0.130 4.130 4 C -0.111 4.111 5 C -0.093 4.093 6 C 0.035 3.965 7 H -0.008 1.008 8 C -0.531 4.531 9 H 0.050 0.950 10 C 0.008 3.992 11 N -0.921 5.921 12 Si 0.954 3.046 13 H -0.267 1.267 14 H -0.280 1.280 15 H -0.280 1.280 16 C -0.102 4.102 17 H 0.067 0.933 18 H 0.060 0.940 19 H 0.039 0.961 20 H 0.044 0.956 21 H 0.060 0.940 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.055 0.945 25 H 0.030 0.970 26 H 0.034 0.966 27 H 0.259 0.741 28 H 0.046 0.954 29 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.348 7.597 0.897 9.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.072 4.072 3 C -0.187 4.187 4 C -0.148 4.148 5 C -0.131 4.131 6 C 0.017 3.983 7 H 0.010 0.990 8 C -0.569 4.569 9 H 0.069 0.931 10 C -0.190 4.190 11 N -0.561 5.561 12 Si 0.779 3.221 13 H -0.191 1.191 14 H -0.206 1.206 15 H -0.206 1.206 16 C -0.140 4.140 17 H 0.086 0.914 18 H 0.079 0.921 19 H 0.058 0.942 20 H 0.063 0.937 21 H 0.079 0.921 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.074 0.926 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.246 7.487 0.983 9.195 hybrid contribution 0.307 -1.223 -0.472 1.346 sum -4.939 6.265 0.511 7.994 Atomic orbital electron populations 1.21814 0.93700 1.01017 1.02013 1.21268 0.96104 0.95420 0.94405 1.21839 1.00244 0.94436 1.02151 1.22502 0.99872 0.95506 0.96930 1.22189 0.97994 0.94847 0.98082 1.19462 0.93131 0.92639 0.93112 0.98973 1.21649 1.28457 0.96277 1.10539 0.93132 1.25810 0.94925 1.01785 0.96505 1.70108 1.31958 1.26957 1.27049 0.85568 0.77951 0.79479 0.79054 1.19097 1.20574 1.20557 1.22365 0.98539 0.96365 0.96709 0.91418 0.92113 0.94186 0.93681 0.92053 0.91429 0.91466 0.92599 0.95101 0.94760 0.93183 0.93514 0.93436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.81 8.15 71.98 0.59 -3.23 15 2 C -0.07 -2.49 0.94 -51.34 -0.05 -2.54 15 3 C -0.13 -3.65 8.17 71.98 0.59 -3.06 15 4 C -0.11 -4.21 5.90 31.67 0.19 -4.02 15 5 C -0.09 -4.57 5.68 31.89 0.18 -4.39 15 6 C 0.03 1.84 2.75 -10.47 -0.03 1.82 15 7 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 15 8 C -0.53 -30.59 8.48 25.60 0.22 -30.38 15 9 H 0.05 2.86 7.56 -2.91 -0.02 2.84 15 10 C 0.01 0.46 5.34 84.65 0.45 0.91 15 11 N -0.92 -55.49 12.13 21.45 0.26 -55.23 15 12 Si 0.95 44.97 29.54 68.60 2.03 47.00 15 13 H -0.27 -12.15 7.11 99.48 0.71 -11.45 15 14 H -0.28 -12.89 7.11 99.48 0.71 -12.19 15 15 H -0.28 -12.88 7.11 99.48 0.71 -12.17 15 16 C -0.10 -4.35 5.69 31.44 0.18 -4.18 15 17 H 0.07 1.69 8.14 -2.39 -0.02 1.67 15 18 H 0.06 1.62 8.14 -2.38 -0.02 1.60 15 19 H 0.04 1.31 8.14 -2.39 -0.02 1.29 15 20 H 0.04 1.33 8.14 -2.39 -0.02 1.31 15 21 H 0.06 1.55 8.14 -2.38 -0.02 1.53 15 22 H 0.07 1.61 8.14 -2.39 -0.02 1.59 15 23 H 0.07 2.25 7.84 -2.39 -0.02 2.23 15 24 H 0.06 2.07 7.85 -2.38 -0.02 2.05 15 25 H 0.03 1.55 8.05 -2.39 -0.02 1.54 15 26 H 0.03 1.85 7.44 -2.39 -0.02 1.83 15 27 H 0.26 14.78 8.31 -92.71 -0.77 14.01 15 28 H 0.05 1.89 7.69 -2.39 -0.02 1.87 15 29 H 0.05 2.05 7.21 -2.38 -0.02 2.03 15 Total: -1.00 -61.88 233.01 5.68 -56.20 By element: Atomic # 1 Polarization: 0.01 SS G_CDS: 1.08 Total: 1.09 kcal Atomic # 6 Polarization: -51.37 SS G_CDS: 2.31 Total: -49.06 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: 0.26 Total: -55.23 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -61.88 5.68 -56.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211695976.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.229 kcal (2) G-P(sol) polarization free energy of solvation -61.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds