Wall clock time and date at job start Mon Mar 30 2020 01:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99765 * 2 1 4 4 H 1.48503 * 109.47174 * 239.99479 * 3 2 1 5 5 H 1.48502 * 109.47320 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47037 * 119.99678 * 3 2 1 7 7 C 1.37874 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99799 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00338 * 0.02562 * 7 2 1 10 10 H 1.09000 * 110.43524 * 2.50477 * 9 7 2 11 11 C 1.51165 * 110.37981 * 124.89722 * 9 7 2 12 12 C 1.30530 * 111.11994 * 102.40547 * 11 9 7 13 13 C 1.51103 * 111.10601 * 359.97056 * 12 11 9 14 14 C 1.54635 * 104.72244 * 16.43612 * 13 12 11 15 15 H 1.08990 * 111.04167 * 93.44116 * 14 13 12 16 16 C 1.53004 * 111.03444 * 217.33600 * 14 13 12 17 17 O 1.42901 * 109.47038 * 294.37829 * 16 14 13 18 18 H 0.96990 * 120.00022 * 0.02562 * 1 2 3 19 19 H 1.08001 * 124.43614 * 282.36172 * 11 9 7 20 20 H 1.08001 * 124.44604 * 179.97438 * 12 11 9 21 21 H 1.09001 * 110.38681 * 257.62288 * 13 12 11 22 22 H 1.08996 * 110.48045 * 135.29085 * 13 12 11 23 23 H 1.08999 * 109.47177 * 174.37664 * 16 14 13 24 24 H 1.09000 * 109.47365 * 54.37834 * 16 14 13 25 25 H 0.96700 * 113.99828 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.1771 -2.3186 -0.0446 11 6 1.6904 -3.3606 -1.1613 12 6 2.5038 -4.3024 -0.7673 13 6 2.7435 -4.2263 0.7226 14 6 1.6059 -3.3261 1.2581 15 1 0.7556 -3.9237 1.5862 16 6 2.1061 -2.4221 2.3867 17 8 2.4744 -3.2234 3.5111 18 1 -0.4850 0.8400 -0.0004 19 1 1.3724 -3.2162 -2.1833 20 1 2.9473 -5.0394 -1.4206 21 1 3.7140 -3.7747 0.9285 22 1 2.6847 -5.2186 1.1695 23 1 1.3144 -1.7312 2.6767 24 1 2.9730 -1.8578 2.0431 25 1 2.8020 -2.7153 4.2658 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213351303.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:41 Heat of formation + Delta-G solvation = -43.360655 kcal Electronic energy + Delta-G solvation = -9726.157360 eV Core-core repulsion = 7897.595760 eV Total energy + Delta-G solvation = -1828.561600 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.04164 -35.40970 -32.54411 -29.22058 -27.58383 -24.28108 -23.24668 -18.83770 -17.80843 -16.35870 -16.16786 -15.08482 -14.34883 -14.00305 -13.14718 -12.22330 -11.84907 -11.47290 -11.05063 -10.83932 -10.64314 -10.48311 -10.32127 -9.88886 -9.42793 -9.08980 -8.81407 -8.54849 -7.72075 -6.07857 -4.10876 3.24635 3.31634 3.32817 3.46029 4.38045 5.12470 5.21094 5.82691 5.93483 6.15199 6.45705 6.49631 6.66995 6.70040 6.80927 7.11589 7.21467 7.40065 7.56366 7.74546 7.83623 8.10951 8.36314 8.41320 8.99102 9.50030 10.99447 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.045059 B = 0.019267 C = 0.015810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.259823 B = 1452.893500 C = 1770.617662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.065 3.935 3 Si 0.891 3.109 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.500 4.500 8 H 0.055 0.945 9 C 0.050 3.950 10 H 0.074 0.926 11 C -0.115 4.115 12 C -0.230 4.230 13 C -0.071 4.071 14 C -0.086 4.086 15 H 0.055 0.945 16 C 0.102 3.898 17 O -0.592 6.592 18 H 0.263 0.737 19 H 0.103 0.897 20 H 0.100 0.900 21 H 0.058 0.942 22 H 0.045 0.955 23 H 0.043 0.957 24 H 0.056 0.944 25 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.354 -2.778 2.325 4.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.137 4.137 3 Si 0.718 3.282 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.538 4.538 8 H 0.073 0.927 9 C 0.032 3.968 10 H 0.092 0.908 11 C -0.134 4.134 12 C -0.248 4.248 13 C -0.108 4.108 14 C -0.105 4.105 15 H 0.073 0.927 16 C 0.025 3.975 17 O -0.397 6.397 18 H 0.073 0.927 19 H 0.121 0.879 20 H 0.118 0.882 21 H 0.077 0.923 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.074 0.926 25 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 2.987 -3.116 1.915 4.722 hybrid contribution 0.677 1.431 0.158 1.591 sum 3.664 -1.686 2.073 4.535 Atomic orbital electron populations 1.69888 1.05953 1.26918 1.50220 1.25013 0.94886 0.99218 0.94608 0.86677 0.79647 0.83060 0.78793 1.20119 1.21194 1.20157 1.20848 0.92765 0.89558 1.50612 0.92684 1.18858 0.99657 0.92035 0.86270 0.90779 1.23776 0.96121 0.93770 0.99722 1.22951 1.03733 1.01309 0.96808 1.21098 0.98788 0.98210 0.92742 1.22041 0.96319 0.96288 0.95821 0.92696 1.22179 0.98937 0.92060 0.84283 1.86431 1.87347 1.39092 1.26796 0.92671 0.87927 0.88188 0.92334 0.93607 0.93850 0.92559 0.79128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.34 12.64 55.43 0.70 -24.64 15 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 15 3 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 15 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 5 H -0.29 -6.66 7.11 56.52 0.40 -6.25 15 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 7 C -0.50 -13.38 6.27 -34.44 -0.22 -13.60 15 8 H 0.05 1.48 7.55 -52.48 -0.40 1.09 15 9 C 0.05 1.27 3.10 -91.83 -0.28 0.99 15 10 H 0.07 2.06 6.99 -51.93 -0.36 1.70 15 11 C -0.12 -2.63 10.07 -35.67 -0.36 -2.99 15 12 C -0.23 -4.78 10.77 -35.70 -0.38 -5.17 15 13 C -0.07 -1.50 6.22 -26.83 -0.17 -1.67 15 14 C -0.09 -1.96 3.35 -88.90 -0.30 -2.26 15 15 H 0.05 1.25 8.14 -51.93 -0.42 0.83 15 16 C 0.10 2.22 5.54 37.16 0.21 2.43 15 17 O -0.59 -11.38 13.49 -35.23 -0.48 -11.86 15 18 H 0.26 7.13 8.31 -40.82 -0.34 6.79 15 19 H 0.10 2.21 8.06 -52.49 -0.42 1.79 15 20 H 0.10 1.82 8.06 -52.49 -0.42 1.39 15 21 H 0.06 1.24 7.86 -51.93 -0.41 0.83 15 22 H 0.05 0.90 8.14 -51.93 -0.42 0.47 15 23 H 0.04 0.99 8.14 -51.93 -0.42 0.57 15 24 H 0.06 1.27 6.73 -51.93 -0.35 0.92 15 25 H 0.36 5.13 9.12 45.56 0.42 5.54 15 LS Contribution 214.89 15.07 3.24 3.24 Total: -1.00 -28.83 214.89 -5.51 -34.34 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -2.35 Total: 3.72 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: -1.60 Total: -20.61 kcal Atomic # 7 Polarization: -25.34 SS G_CDS: 0.70 Total: -24.64 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: -0.48 Total: -11.86 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -28.83 -5.51 -34.34 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213351303.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.026 kcal (2) G-P(sol) polarization free energy of solvation -28.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds