Wall clock time and date at job start Mon Mar 30 2020 01:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99765 * 2 1 4 4 H 1.48503 * 109.47174 * 239.99479 * 3 2 1 5 5 H 1.48502 * 109.47320 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47037 * 119.99678 * 3 2 1 7 7 C 1.37874 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99799 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00338 * 0.02562 * 7 2 1 10 10 H 1.09000 * 110.43524 * 2.50477 * 9 7 2 11 11 C 1.51165 * 110.37981 * 124.89722 * 9 7 2 12 12 C 1.30530 * 111.11994 * 102.40547 * 11 9 7 13 13 C 1.51103 * 111.10601 * 359.97056 * 12 11 9 14 14 C 1.54635 * 104.72244 * 16.43612 * 13 12 11 15 15 H 1.08990 * 111.04167 * 93.44116 * 14 13 12 16 16 C 1.53004 * 111.03444 * 217.33600 * 14 13 12 17 17 O 1.42901 * 109.47038 * 294.37829 * 16 14 13 18 18 H 0.96990 * 120.00022 * 0.02562 * 1 2 3 19 19 H 1.08001 * 124.43614 * 282.36172 * 11 9 7 20 20 H 1.08001 * 124.44604 * 179.97438 * 12 11 9 21 21 H 1.09001 * 110.38681 * 257.62288 * 13 12 11 22 22 H 1.08996 * 110.48045 * 135.29085 * 13 12 11 23 23 H 1.08999 * 109.47177 * 174.37664 * 16 14 13 24 24 H 1.09000 * 109.47365 * 54.37834 * 16 14 13 25 25 H 0.96700 * 113.99828 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.1771 -2.3186 -0.0446 11 6 1.6904 -3.3606 -1.1613 12 6 2.5038 -4.3024 -0.7673 13 6 2.7435 -4.2263 0.7226 14 6 1.6059 -3.3261 1.2581 15 1 0.7556 -3.9237 1.5862 16 6 2.1061 -2.4221 2.3867 17 8 2.4744 -3.2234 3.5111 18 1 -0.4850 0.8400 -0.0004 19 1 1.3724 -3.2162 -2.1833 20 1 2.9473 -5.0394 -1.4206 21 1 3.7140 -3.7747 0.9285 22 1 2.6847 -5.2186 1.1695 23 1 1.3144 -1.7312 2.6767 24 1 2.9730 -1.8578 2.0431 25 1 2.8020 -2.7153 4.2658 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213351303.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:41 Heat of formation + Delta-G solvation = -62.934038 kcal Electronic energy + Delta-G solvation = -9727.006126 eV Core-core repulsion = 7897.595760 eV Total energy + Delta-G solvation = -1829.410366 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.82380 -37.03114 -34.57512 -30.97862 -29.48258 -26.18781 -25.07699 -20.70836 -19.52553 -18.25917 -17.93160 -16.86694 -16.24271 -15.76161 -14.85445 -14.14213 -13.49156 -13.39723 -12.90642 -12.62398 -12.41525 -12.32279 -12.13095 -11.67259 -11.29112 -10.95028 -10.64207 -10.54663 -9.51244 -8.12401 -6.22049 1.40253 1.42540 1.50156 1.71407 2.43157 3.15827 3.55292 4.10112 4.17753 4.41116 4.73521 4.78181 4.91204 4.97605 5.10660 5.31275 5.40423 5.57441 5.64257 5.73445 5.94025 6.33896 6.36851 6.92982 7.02847 7.41587 8.94449 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.045059 B = 0.019267 C = 0.015810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.259823 B = 1452.893500 C = 1770.617662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.015 3.985 3 Si 0.952 3.048 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.504 4.504 8 H 0.052 0.948 9 C 0.042 3.958 10 H 0.035 0.965 11 C -0.149 4.149 12 C -0.200 4.200 13 C -0.069 4.069 14 C -0.091 4.091 15 H 0.049 0.951 16 C 0.116 3.884 17 O -0.592 6.592 18 H 0.263 0.737 19 H 0.108 0.892 20 H 0.137 0.863 21 H 0.061 0.939 22 H 0.067 0.933 23 H 0.022 0.978 24 H 0.049 0.951 25 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.933 -3.337 2.538 6.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.183 4.183 3 Si 0.777 3.223 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.541 4.541 8 H 0.070 0.930 9 C 0.023 3.977 10 H 0.053 0.947 11 C -0.168 4.168 12 C -0.218 4.218 13 C -0.106 4.106 14 C -0.110 4.110 15 H 0.068 0.932 16 C 0.039 3.961 17 O -0.400 6.400 18 H 0.072 0.928 19 H 0.126 0.874 20 H 0.154 0.846 21 H 0.080 0.920 22 H 0.085 0.915 23 H 0.041 0.959 24 H 0.067 0.933 25 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 4.587 -3.680 2.147 6.260 hybrid contribution 0.196 1.513 0.146 1.533 sum 4.782 -2.167 2.293 5.729 Atomic orbital electron populations 1.70027 1.07451 1.27554 1.51758 1.25750 0.95569 1.02491 0.94527 0.85705 0.78445 0.79038 0.79130 1.19677 1.21101 1.19068 1.21046 0.92607 0.90567 1.49923 0.92957 1.18821 0.97292 0.92762 0.88792 0.94689 1.23684 0.98542 0.95168 0.99362 1.23262 1.01347 1.00236 0.96963 1.21106 0.97815 0.98751 0.92972 1.22017 0.97179 0.96461 0.95365 0.93203 1.21820 0.97803 0.91541 0.84918 1.86368 1.87363 1.39179 1.27083 0.92804 0.87390 0.84554 0.92016 0.91489 0.95929 0.93263 0.76300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.99 12.64 21.45 0.27 -53.72 15 2 C 0.02 0.82 5.46 84.65 0.46 1.28 15 3 Si 0.95 42.66 29.54 68.60 2.03 44.68 15 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 15 5 H -0.29 -12.65 7.11 99.48 0.71 -11.95 15 6 H -0.27 -11.38 7.11 99.48 0.71 -10.67 15 7 C -0.50 -27.05 6.27 25.60 0.16 -26.89 15 8 H 0.05 2.78 7.55 -2.91 -0.02 2.76 15 9 C 0.04 2.15 3.10 -11.58 -0.04 2.12 15 10 H 0.03 2.02 6.99 -2.39 -0.02 2.01 15 11 C -0.15 -6.68 10.07 26.28 0.26 -6.42 15 12 C -0.20 -7.74 10.77 26.26 0.28 -7.46 15 13 C -0.07 -2.73 6.22 30.53 0.19 -2.54 15 14 C -0.09 -4.12 3.35 -9.68 -0.03 -4.15 15 15 H 0.05 2.26 8.14 -2.39 -0.02 2.24 15 16 C 0.12 4.99 5.54 71.98 0.40 5.39 15 17 O -0.59 -21.47 13.49 -148.98 -2.01 -23.48 15 18 H 0.26 14.54 8.31 -92.72 -0.77 13.77 15 19 H 0.11 4.61 8.06 -2.91 -0.02 4.59 15 20 H 0.14 4.31 8.06 -2.91 -0.02 4.29 15 21 H 0.06 2.43 7.86 -2.39 -0.02 2.41 15 22 H 0.07 2.38 8.14 -2.39 -0.02 2.36 15 23 H 0.02 1.04 8.14 -2.39 -0.02 1.02 15 24 H 0.05 2.17 6.73 -2.39 -0.02 2.15 15 25 H 0.39 9.93 9.12 -74.06 -0.68 9.26 15 Total: -1.00 -60.62 214.89 2.47 -58.14 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 0.50 Total: 13.04 kcal Atomic # 6 Polarization: -40.36 SS G_CDS: 1.69 Total: -38.67 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: 0.27 Total: -53.72 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -2.01 Total: -23.48 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -60.62 2.47 -58.14 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213351303.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.790 kcal (2) G-P(sol) polarization free energy of solvation -60.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds