Wall clock time and date at job start Mon Mar 30 2020 01:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99712 * 2 1 4 4 H 1.48501 * 109.47230 * 270.00226 * 3 2 1 5 5 H 1.48502 * 109.47125 * 30.00012 * 3 2 1 6 6 H 1.48501 * 109.47207 * 150.00017 * 3 2 1 7 7 C 1.37868 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99988 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00037 * 0.02562 * 7 2 1 10 10 H 1.08996 * 110.43483 * 302.34233 * 9 7 2 11 11 C 1.51103 * 110.39063 * 64.69495 * 9 7 2 12 12 C 1.30532 * 111.10210 * 102.37392 * 11 9 7 13 13 C 1.51097 * 111.10426 * 0.02562 * 12 11 9 14 14 C 1.54635 * 104.73008 * 16.43816 * 13 12 11 15 15 H 1.08997 * 111.07159 * 217.32335 * 14 13 12 16 16 C 1.52999 * 111.03877 * 93.39171 * 14 13 12 17 17 O 1.42905 * 109.46728 * 72.98296 * 16 14 13 18 18 H 0.97002 * 120.00287 * 359.97438 * 1 2 3 19 19 H 1.07995 * 124.44643 * 282.40338 * 11 9 7 20 20 H 1.08001 * 124.44117 * 180.02562 * 12 11 9 21 21 H 1.09000 * 110.38821 * 257.62050 * 13 12 11 22 22 H 1.09002 * 110.38692 * 135.24793 * 13 12 11 23 23 H 1.09000 * 109.47486 * 312.98235 * 16 14 13 24 24 H 1.09001 * 109.47362 * 192.97512 * 16 14 13 25 25 H 0.96696 * 114.00036 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1939 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.5872 -2.5560 0.8609 11 6 0.4640 -2.6515 -1.2826 12 6 1.0621 -3.4675 -2.1073 13 6 2.3473 -3.9958 -1.5138 14 6 2.2365 -3.6911 -0.0018 15 1 3.2023 -3.3999 0.4110 16 6 1.6551 -4.8850 0.7580 17 8 2.6351 -5.9221 0.8372 18 1 -0.4851 0.8400 0.0004 19 1 -0.4703 -2.1506 -1.4887 20 1 0.6874 -3.7305 -3.0855 21 1 3.2049 -3.4783 -1.9437 22 1 2.4287 -5.0700 -1.6796 23 1 0.7750 -5.2562 0.2329 24 1 1.3737 -4.5735 1.7639 25 1 2.3348 -6.7119 1.3073 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213351414.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:46 Heat of formation + Delta-G solvation = -44.397525 kcal Electronic energy + Delta-G solvation = -9618.092336 eV Core-core repulsion = 7789.485773 eV Total energy + Delta-G solvation = -1828.606562 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.14303 -35.65304 -32.40991 -29.10165 -27.55449 -25.06811 -22.86168 -18.74904 -17.78897 -16.96471 -15.94113 -14.93994 -14.47075 -14.24828 -13.34605 -12.19525 -12.10160 -11.18326 -11.12807 -10.71486 -10.62579 -10.47307 -10.20406 -9.99570 -9.47801 -9.42138 -9.13451 -8.43361 -7.55127 -6.04241 -4.07518 3.29943 3.36607 3.39964 3.66202 4.41696 4.84227 5.29652 5.64145 5.85861 5.96413 6.21416 6.27389 6.52891 6.62913 6.84851 6.99433 7.14012 7.47667 7.57242 7.79321 7.93175 8.07051 8.30611 8.36578 8.94993 9.55614 11.04605 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.065700 B = 0.014656 C = 0.013782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.075869 B = 1910.066316 C = 2031.149802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.504 4.504 8 H 0.059 0.941 9 C 0.070 3.930 10 H 0.033 0.967 11 C -0.080 4.080 12 C -0.251 4.251 13 C -0.069 4.069 14 C -0.092 4.092 15 H 0.074 0.926 16 C 0.087 3.913 17 O -0.578 6.578 18 H 0.261 0.739 19 H 0.111 0.889 20 H 0.098 0.902 21 H 0.057 0.943 22 H 0.048 0.952 23 H 0.041 0.959 24 H 0.041 0.959 25 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.255 -6.442 0.202 6.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.140 4.140 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.542 4.542 8 H 0.078 0.922 9 C 0.052 3.948 10 H 0.051 0.949 11 C -0.098 4.098 12 C -0.269 4.269 13 C -0.106 4.106 14 C -0.110 4.110 15 H 0.092 0.908 16 C 0.010 3.990 17 O -0.382 6.382 18 H 0.070 0.930 19 H 0.129 0.871 20 H 0.116 0.884 21 H 0.076 0.924 22 H 0.067 0.933 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 1.458 -5.863 -0.124 6.042 hybrid contribution -0.046 0.688 0.131 0.702 sum 1.411 -5.174 0.007 5.364 Atomic orbital electron populations 1.69961 1.05929 1.26649 1.50304 1.24996 0.94927 0.99208 0.94895 0.86558 0.79891 0.83249 0.78150 1.20648 1.21189 1.19800 1.21039 0.92769 0.89650 1.50730 0.92241 1.18606 0.91771 0.91530 0.92919 0.94860 1.23597 0.97111 0.91220 0.97893 1.22844 0.99067 1.05392 0.99583 1.21051 0.96403 0.98421 0.94749 1.22123 1.00691 0.93895 0.94328 0.90757 1.22293 0.90140 0.87920 0.98668 1.86507 1.43087 1.28376 1.80234 0.92955 0.87145 0.88382 0.92427 0.93325 0.94090 0.94033 0.78822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.62 12.51 55.43 0.69 -24.93 15 2 C 0.06 1.72 5.34 -17.83 -0.10 1.63 15 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 15 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 7 C -0.50 -14.07 8.51 -34.44 -0.29 -14.36 15 8 H 0.06 1.65 7.58 -52.49 -0.40 1.25 15 9 C 0.07 1.79 2.35 -91.85 -0.22 1.57 15 10 H 0.03 0.90 7.88 -51.93 -0.41 0.49 15 11 C -0.08 -1.95 9.29 -35.70 -0.33 -2.28 15 12 C -0.25 -5.50 10.78 -35.70 -0.38 -5.89 15 13 C -0.07 -1.46 6.32 -26.83 -0.17 -1.63 15 14 C -0.09 -2.03 2.92 -88.89 -0.26 -2.29 15 15 H 0.07 1.71 7.74 -51.93 -0.40 1.31 15 16 C 0.09 1.62 6.33 37.16 0.24 1.86 15 17 O -0.58 -9.77 13.52 -35.23 -0.48 -10.25 15 18 H 0.26 7.14 8.31 -40.82 -0.34 6.80 15 19 H 0.11 2.81 7.86 -52.49 -0.41 2.39 15 20 H 0.10 1.93 8.06 -52.49 -0.42 1.51 15 21 H 0.06 1.23 8.14 -51.93 -0.42 0.81 15 22 H 0.05 0.95 7.81 -51.93 -0.41 0.54 15 23 H 0.04 0.74 8.12 -51.93 -0.42 0.32 15 24 H 0.04 0.75 8.11 -51.93 -0.42 0.33 15 25 H 0.37 4.15 9.12 45.56 0.42 4.56 15 LS Contribution 217.45 15.07 3.28 3.28 Total: -1.00 -29.82 217.45 -5.48 -35.30 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -2.43 Total: 1.52 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: -1.51 Total: -21.40 kcal Atomic # 7 Polarization: -25.62 SS G_CDS: 0.69 Total: -24.93 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: -0.48 Total: -10.25 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -29.82 -5.48 -35.30 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213351414.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.097 kcal (2) G-P(sol) polarization free energy of solvation -29.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds