Wall clock time and date at job start Mon Mar 30 2020 01:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99851 * 2 1 4 4 H 1.48494 * 109.47189 * 270.00231 * 3 2 1 5 5 H 1.48499 * 109.47138 * 30.00510 * 3 2 1 6 6 H 1.48506 * 109.46874 * 150.00190 * 3 2 1 7 7 C 1.37882 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99470 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00133 * 359.72444 * 7 2 1 10 10 H 1.09007 * 110.34348 * 359.08259 * 9 7 2 11 11 C 1.51098 * 110.38586 * 236.79721 * 9 7 2 12 12 C 1.30519 * 111.10768 * 257.62476 * 11 9 7 13 13 C 1.51108 * 111.10433 * 0.02562 * 12 11 9 14 14 C 1.54631 * 110.38591 * 121.37334 * 9 7 2 15 15 H 1.09005 * 111.03280 * 212.20685 * 14 9 7 16 16 C 1.52996 * 111.03986 * 336.14130 * 14 9 7 17 17 O 1.42892 * 109.47232 * 185.38757 * 16 14 9 18 18 H 0.96999 * 120.00033 * 359.97438 * 1 2 3 19 19 H 1.08008 * 124.44773 * 77.64196 * 11 9 7 20 20 H 1.07999 * 124.45702 * 179.97438 * 12 11 9 21 21 H 1.08999 * 110.38591 * 102.37059 * 13 12 11 22 22 H 1.08997 * 110.38784 * 224.63934 * 13 12 11 23 23 H 1.08997 * 109.47381 * 305.39627 * 16 14 9 24 24 H 1.09007 * 109.46589 * 65.39284 * 16 14 9 25 25 H 0.96706 * 114.00297 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 0.0052 10 1 0.1766 -2.3164 0.0256 11 6 1.6645 -3.3405 1.1902 12 6 2.4865 -4.2881 0.8300 13 6 2.7589 -4.2365 -0.6555 14 6 1.6301 -3.3454 -1.2323 15 1 0.7863 -3.9488 -1.5670 16 6 2.1520 -2.4590 -2.3649 17 8 2.3730 -3.2560 -3.5302 18 1 -0.4850 0.8400 0.0004 19 1 1.3243 -3.1790 2.2025 20 1 2.9164 -5.0135 1.5049 21 1 3.7335 -3.7878 -0.8474 22 1 2.7111 -5.2371 -1.0853 23 1 1.4180 -1.6848 -2.5881 24 1 3.0894 -1.9939 -2.0597 25 1 2.7055 -2.7584 -4.2898 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213351471.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:49 Heat of formation + Delta-G solvation = -63.421118 kcal Electronic energy + Delta-G solvation = -9717.822183 eV Core-core repulsion = 7888.390696 eV Total energy + Delta-G solvation = -1829.431487 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.80811 -37.04848 -34.57445 -30.98370 -29.48215 -26.18515 -25.06905 -20.72898 -19.51663 -18.27258 -17.97033 -16.84731 -16.22412 -15.73380 -14.89411 -14.14906 -13.47797 -13.38958 -12.92279 -12.63107 -12.39796 -12.33060 -12.14565 -11.69656 -11.29015 -10.96357 -10.63121 -10.54880 -9.51203 -8.12744 -6.22616 1.38763 1.41870 1.51729 1.71400 2.42923 3.15785 3.55825 4.06604 4.17619 4.40738 4.74335 4.78257 4.92115 4.95910 5.09143 5.30787 5.38592 5.57108 5.64269 5.73480 5.94156 6.33743 6.36709 6.93247 7.02766 7.41502 8.94301 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.044628 B = 0.019251 C = 0.015748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.258016 B = 1454.085335 C = 1777.611960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.014 3.986 3 Si 0.952 3.048 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.503 4.503 8 H 0.052 0.948 9 C 0.041 3.959 10 H 0.034 0.966 11 C -0.149 4.149 12 C -0.200 4.200 13 C -0.072 4.072 14 C -0.091 4.091 15 H 0.050 0.950 16 C 0.119 3.881 17 O -0.594 6.594 18 H 0.263 0.737 19 H 0.107 0.893 20 H 0.137 0.863 21 H 0.063 0.937 22 H 0.067 0.933 23 H 0.024 0.976 24 H 0.047 0.953 25 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.071 -3.408 -2.460 6.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.184 4.184 3 Si 0.777 3.223 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.541 4.541 8 H 0.071 0.929 9 C 0.023 3.977 10 H 0.053 0.947 11 C -0.167 4.167 12 C -0.218 4.218 13 C -0.109 4.109 14 C -0.110 4.110 15 H 0.069 0.931 16 C 0.041 3.959 17 O -0.401 6.401 18 H 0.072 0.928 19 H 0.125 0.875 20 H 0.155 0.845 21 H 0.081 0.919 22 H 0.086 0.914 23 H 0.042 0.958 24 H 0.065 0.935 25 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 4.706 -3.745 -2.066 6.359 hybrid contribution 0.214 1.517 -0.139 1.538 sum 4.920 -2.228 -2.206 5.834 Atomic orbital electron populations 1.70039 1.07467 1.27478 1.51852 1.25762 0.95571 1.02536 0.94536 0.85640 0.78760 0.79348 0.78511 1.19692 1.21068 1.19148 1.21090 0.92629 0.90553 1.49806 0.92931 1.18820 0.97314 0.92803 0.88810 0.94749 1.23667 0.98522 0.95155 0.99376 1.23250 1.01251 1.00221 0.97094 1.21214 0.97802 0.98880 0.92960 1.22062 0.97237 0.96511 0.95192 0.93135 1.21792 0.98510 0.91526 0.84026 1.86372 1.89191 1.40664 1.23894 0.92818 0.87456 0.84545 0.91884 0.91396 0.95753 0.93476 0.76256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.12 12.63 21.45 0.27 -53.85 15 2 C 0.01 0.78 5.46 84.66 0.46 1.24 15 3 Si 0.95 42.74 29.54 68.60 2.03 44.76 15 4 H -0.27 -11.73 7.11 99.48 0.71 -11.03 15 5 H -0.28 -12.68 7.11 99.48 0.71 -11.98 15 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 15 7 C -0.50 -27.03 6.37 25.60 0.16 -26.86 15 8 H 0.05 2.80 7.58 -2.91 -0.02 2.78 15 9 C 0.04 2.11 3.09 -11.60 -0.04 2.08 15 10 H 0.03 1.99 6.98 -2.38 -0.02 1.98 15 11 C -0.15 -6.67 10.07 26.27 0.26 -6.41 15 12 C -0.20 -7.73 10.78 26.27 0.28 -7.44 15 13 C -0.07 -2.80 6.36 30.65 0.19 -2.60 15 14 C -0.09 -4.10 3.33 -9.57 -0.03 -4.14 15 15 H 0.05 2.30 8.14 -2.38 -0.02 2.28 15 16 C 0.12 5.06 5.38 71.98 0.39 5.45 15 17 O -0.59 -21.53 13.63 -148.98 -2.03 -23.57 15 18 H 0.26 14.52 8.31 -92.71 -0.77 13.75 15 19 H 0.11 4.61 8.06 -2.91 -0.02 4.58 15 20 H 0.14 4.30 8.06 -2.91 -0.02 4.28 15 21 H 0.06 2.44 7.75 -2.39 -0.02 2.42 15 22 H 0.07 2.38 8.14 -2.39 -0.02 2.36 15 23 H 0.02 1.14 8.06 -2.39 -0.02 1.12 15 24 H 0.05 2.02 6.98 -2.38 -0.02 2.00 15 25 H 0.39 9.92 9.12 -74.05 -0.68 9.25 15 Total: -1.00 -60.91 215.14 2.45 -58.47 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.50 Total: 12.87 kcal Atomic # 6 Polarization: -40.37 SS G_CDS: 1.69 Total: -38.68 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: 0.27 Total: -53.85 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -2.03 Total: -23.57 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Total: -60.91 2.45 -58.47 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213351471.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.956 kcal (2) G-P(sol) polarization free energy of solvation -60.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds