Wall clock time and date at job start Mon Mar 30 2020 02:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 110.01898 * 2 1 4 4 C 1.54268 * 110.03310 * 238.55057 * 2 1 3 5 5 C 1.54882 * 104.19992 * 264.32869 * 4 2 1 6 6 C 1.54897 * 102.74839 * 322.05790 * 5 4 2 7 7 C 1.53876 * 110.02986 * 121.38795 * 2 1 3 8 8 H 1.08998 * 110.07695 * 359.97438 * 7 2 1 9 9 C 1.50698 * 110.03304 * 238.56637 * 7 2 1 10 10 H 1.07996 * 120.00000 * 1.37820 * 9 7 2 11 11 C 1.37883 * 120.00141 * 181.37925 * 9 7 2 12 12 N 1.31510 * 119.99895 * 0.02562 * 11 9 7 13 13 Si 1.86795 * 119.99955 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47334 * 60.00440 * 13 11 9 15 15 H 1.48506 * 109.47186 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47472 * 299.99859 * 13 11 9 17 17 H 1.09005 * 109.46791 * 298.61334 * 1 2 3 18 18 H 1.09002 * 109.46478 * 58.61160 * 1 2 3 19 19 H 1.08997 * 109.47033 * 178.61424 * 1 2 3 20 20 H 1.09000 * 109.47095 * 181.38922 * 3 2 1 21 21 H 1.08994 * 109.46849 * 301.38363 * 3 2 1 22 22 H 1.08992 * 109.47420 * 61.39205 * 3 2 1 23 23 H 1.09003 * 110.48471 * 145.65177 * 4 2 1 24 24 H 1.09004 * 110.48268 * 23.00944 * 4 2 1 25 25 H 1.08994 * 110.76048 * 203.74464 * 5 4 2 26 26 H 1.09004 * 110.75771 * 80.36858 * 5 4 2 27 27 H 1.08999 * 110.48266 * 156.62203 * 6 5 4 28 28 H 1.08999 * 110.48462 * 279.12630 * 6 5 4 29 29 H 0.97003 * 120.00128 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0538 1.4376 0.0000 4 6 2.0585 -0.7562 -1.2364 5 6 2.3280 -2.1906 -0.7180 6 6 2.8874 -1.9404 0.7046 7 6 2.0570 -0.7530 1.2341 8 1 1.2234 -1.1183 1.8338 9 6 2.9276 0.1574 2.0615 10 1 3.0775 1.1831 1.7586 11 6 3.5326 -0.3192 3.2051 12 7 3.3505 -1.5684 3.5736 13 14 4.6111 0.8094 4.2309 14 1 3.8080 1.9651 4.7050 15 1 5.1401 0.0611 5.3995 16 1 5.7430 1.2991 3.4037 17 1 -0.3633 0.4922 0.9022 18 1 -0.3632 0.5353 -0.8773 19 1 -0.3633 -1.0273 -0.0249 20 1 3.1434 1.4272 -0.0249 21 1 1.6753 1.9621 -0.8773 22 1 1.7159 1.9474 0.9021 23 1 2.9812 -0.3010 -1.5964 24 1 1.3061 -0.7706 -2.0251 25 1 3.0675 -2.6939 -1.3408 26 1 1.4030 -2.7655 -0.6737 27 1 2.7400 -2.8191 1.3324 28 1 3.9445 -1.6788 0.6582 29 1 3.7758 -1.9037 4.3784 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213584255.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:01 Heat of formation + Delta-G solvation = -40.255209 kcal Electronic energy + Delta-G solvation = -10204.271898 eV Core-core repulsion = 8511.678055 eV Total energy + Delta-G solvation = -1692.593844 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.78970 -34.54267 -32.78279 -30.01192 -28.13504 -26.02049 -24.62460 -21.31063 -19.39694 -17.84567 -16.58886 -15.97177 -15.49943 -14.60092 -14.17275 -14.00827 -13.61469 -13.37203 -12.98668 -12.68396 -12.42871 -12.14497 -11.81664 -11.46863 -11.41175 -11.17935 -11.05635 -10.65286 -10.47052 -10.39146 -8.04723 -6.11159 1.41230 1.42230 1.49180 2.46872 3.26378 4.04938 4.12939 4.19958 4.65032 4.69850 4.79116 4.94602 4.97687 5.07049 5.10459 5.14559 5.24536 5.28211 5.37737 5.52220 5.62464 5.70674 5.76690 5.84581 6.02523 6.09944 6.51771 7.01376 7.55769 9.04710 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.057236 B = 0.017856 C = 0.015674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.084354 B = 1567.686032 C = 1786.004090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.074 4.074 3 C -0.112 4.112 4 C -0.102 4.102 5 C -0.123 4.123 6 C -0.088 4.088 7 C 0.046 3.954 8 H -0.011 1.011 9 C -0.528 4.528 10 H 0.077 0.923 11 C 0.004 3.996 12 N -0.927 5.927 13 Si 0.946 3.054 14 H -0.271 1.271 15 H -0.290 1.290 16 H -0.271 1.271 17 H 0.037 0.963 18 H 0.068 0.932 19 H 0.046 0.954 20 H 0.042 0.958 21 H 0.054 0.946 22 H 0.040 0.960 23 H 0.059 0.941 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.022 0.978 28 H 0.025 0.975 29 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.517 2.719 -7.688 8.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.074 4.074 3 C -0.169 4.169 4 C -0.140 4.140 5 C -0.161 4.161 6 C -0.126 4.126 7 C 0.027 3.973 8 H 0.007 0.993 9 C -0.566 4.566 10 H 0.095 0.905 11 C -0.194 4.194 12 N -0.568 5.568 13 Si 0.772 3.228 14 H -0.197 1.197 15 H -0.216 1.216 16 H -0.196 1.196 17 H 0.056 0.944 18 H 0.087 0.913 19 H 0.065 0.935 20 H 0.061 0.939 21 H 0.073 0.927 22 H 0.059 0.941 23 H 0.078 0.922 24 H 0.096 0.904 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.041 0.959 28 H 0.044 0.956 29 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.470 2.607 -7.546 8.357 hybrid contribution 0.724 0.158 1.217 1.425 sum -1.746 2.765 -6.329 7.124 Atomic orbital electron populations 1.21786 0.94668 1.00842 1.00930 1.21249 0.95100 0.95699 0.95331 1.21733 0.99992 0.95530 0.99675 1.22374 1.00422 0.94695 0.96470 1.22544 1.00083 0.97239 0.96225 1.22078 0.98048 0.98157 0.94328 1.19335 0.93378 0.92634 0.91936 0.99325 1.22122 1.28156 0.98547 1.07738 0.90513 1.25821 0.98306 0.96205 0.99043 1.70136 1.45569 1.16005 1.25050 0.85796 0.79512 0.79165 0.78300 1.19663 1.21588 1.19628 0.94376 0.91320 0.93494 0.93891 0.92724 0.94084 0.92249 0.90428 0.91637 0.92044 0.95876 0.95567 0.93639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.34 8.14 71.98 0.59 -3.76 15 2 C -0.07 -2.95 0.94 -51.46 -0.05 -2.99 15 3 C -0.11 -4.28 6.86 71.98 0.49 -3.78 15 4 C -0.10 -3.53 5.90 31.67 0.19 -3.35 15 5 C -0.12 -4.63 6.91 31.89 0.22 -4.41 15 6 C -0.09 -4.31 5.36 31.67 0.17 -4.14 15 7 C 0.05 2.32 2.50 -10.81 -0.03 2.29 15 8 H -0.01 -0.66 7.67 -2.39 -0.02 -0.67 15 9 C -0.53 -29.16 7.51 25.60 0.19 -28.96 15 10 H 0.08 4.05 4.66 -2.91 -0.01 4.04 15 11 C 0.00 0.20 5.32 84.66 0.45 0.65 15 12 N -0.93 -56.00 12.33 21.45 0.26 -55.74 15 13 Si 0.95 44.77 29.54 68.60 2.03 46.79 15 14 H -0.27 -12.43 7.11 99.48 0.71 -11.72 15 15 H -0.29 -13.66 7.11 99.48 0.71 -12.95 15 16 H -0.27 -12.40 7.11 99.48 0.71 -11.70 15 17 H 0.04 1.38 8.14 -2.38 -0.02 1.36 15 18 H 0.07 1.94 8.14 -2.39 -0.02 1.92 15 19 H 0.05 1.59 8.14 -2.39 -0.02 1.57 15 20 H 0.04 1.73 7.10 -2.39 -0.02 1.71 15 21 H 0.05 1.70 8.14 -2.39 -0.02 1.68 15 22 H 0.04 1.65 7.09 -2.39 -0.02 1.63 15 23 H 0.06 2.02 7.84 -2.39 -0.02 2.00 15 24 H 0.08 2.22 7.84 -2.39 -0.02 2.20 15 25 H 0.06 2.18 8.14 -2.39 -0.02 2.16 15 26 H 0.06 2.17 8.14 -2.38 -0.02 2.15 15 27 H 0.02 1.22 7.93 -2.39 -0.02 1.20 15 28 H 0.03 1.36 7.85 -2.39 -0.02 1.34 15 29 H 0.25 14.79 8.31 -92.71 -0.77 14.02 15 Total: -1.00 -61.06 227.77 5.61 -55.45 By element: Atomic # 1 Polarization: 0.84 SS G_CDS: 1.09 Total: 1.94 kcal Atomic # 6 Polarization: -50.67 SS G_CDS: 2.22 Total: -48.44 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.26 Total: -55.74 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -61.06 5.61 -55.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213584255.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.196 kcal (2) G-P(sol) polarization free energy of solvation -61.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds