Wall clock time and date at job start Mon Mar 30 2020 02:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35241 * 116.99706 * 2 1 4 4 C 1.38115 * 126.48853 * 179.97438 * 3 2 1 5 5 N 1.32882 * 107.67907 * 179.97438 * 4 3 2 6 6 C 1.32898 * 108.83489 * 359.97438 * 5 4 3 7 7 C 1.39498 * 125.59616 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99664 * 180.02562 * 7 6 5 9 9 C 1.40221 * 120.00046 * 0.02562 * 7 6 5 10 10 N 1.30728 * 119.99764 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99927 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47024 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47110 * 119.99834 * 11 9 7 14 14 H 1.48506 * 109.46809 * 239.99915 * 11 9 7 15 15 O 1.34729 * 126.49644 * 359.95347 * 3 2 1 16 16 H 1.09004 * 109.47013 * 179.97438 * 1 2 3 17 17 H 1.08996 * 109.47526 * 300.00515 * 1 2 3 18 18 H 1.08999 * 109.46749 * 60.00418 * 1 2 3 19 19 H 1.07997 * 126.16206 * 359.70113 * 4 3 2 20 20 H 0.97005 * 119.99819 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0430 1.2050 0.0000 4 6 3.4052 1.4328 0.0005 5 7 3.5944 2.7481 -0.0003 6 6 2.4105 3.3519 -0.0018 7 6 2.2026 4.7313 -0.0024 8 1 1.1972 5.1257 -0.0033 9 6 3.2988 5.6056 -0.0020 10 7 4.5157 5.1280 -0.0005 11 14 3.0203 7.4527 -0.0022 12 1 1.5620 7.7334 -0.0034 13 1 3.6382 8.0466 1.2105 14 1 3.6393 8.0465 -1.2145 15 8 1.4417 2.4107 -0.0009 16 1 -0.3633 -1.0277 -0.0005 17 1 -0.3634 0.5139 0.8899 18 1 -0.3633 0.5138 -0.8900 19 1 4.1775 0.6779 0.0055 20 1 5.2741 5.7328 0.0002 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213587868.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:43 Heat of formation + Delta-G solvation = -24.210993 kcal Electronic energy + Delta-G solvation = -9413.227068 eV Core-core repulsion = 7384.236854 eV Total energy + Delta-G solvation = -2028.990214 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 169.053 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.00948 -37.32702 -33.80028 -32.50301 -28.86560 -27.05781 -24.41411 -20.98050 -20.42984 -17.59216 -16.94779 -15.58808 -15.41815 -14.42981 -13.98363 -13.81868 -12.71166 -11.73731 -11.52720 -11.39054 -11.33251 -10.68470 -10.66080 -10.31206 -9.73712 -9.11893 -8.28896 -6.99786 -6.64114 -4.47656 2.90191 3.07244 3.13188 3.31783 3.75932 3.97685 4.41478 4.84846 5.34409 5.61866 5.67099 5.91068 6.25975 6.71259 7.07929 7.42701 7.68686 8.08233 8.35643 8.59468 8.78123 9.96683 10.28983 Molecular weight = 169.05amu Principal moments of inertia in cm(-1) A = 0.107276 B = 0.013481 C = 0.012054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 260.946723 B = 2076.532351 C = 2322.335207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.279 6.279 3 C -0.022 4.022 4 C -0.018 4.018 5 N -0.519 5.519 6 C 0.327 3.673 7 C -0.435 4.435 8 H 0.091 0.909 9 C 0.075 3.925 10 N -0.729 5.729 11 Si 0.928 3.072 12 H -0.260 1.260 13 H -0.272 1.272 14 H -0.272 1.272 15 O -0.265 6.265 16 H 0.088 0.912 17 H 0.046 0.954 18 H 0.046 0.954 19 H 0.155 0.845 20 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.259 -1.237 0.003 4.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.194 6.194 3 C -0.118 4.118 4 C -0.162 4.162 5 N -0.250 5.250 6 C 0.143 3.857 7 C -0.471 4.471 8 H 0.109 0.891 9 C -0.150 4.150 10 N -0.354 5.354 11 Si 0.751 3.249 12 H -0.184 1.184 13 H -0.197 1.197 14 H -0.197 1.197 15 O -0.164 6.164 16 H 0.107 0.893 17 H 0.065 0.935 18 H 0.065 0.935 19 H 0.172 0.828 20 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.386 -1.066 0.005 3.550 hybrid contribution -1.070 0.292 -0.001 1.109 sum -4.455 -0.774 0.004 4.522 Atomic orbital electron populations 1.22698 0.80000 1.02178 1.01210 1.86098 1.20252 1.20806 1.92215 1.21522 0.90349 0.77882 1.22070 1.22748 0.89703 0.95099 1.08649 1.71464 1.23137 1.01336 1.29105 1.21885 0.78713 0.89632 0.95477 1.18041 0.95312 0.84936 1.48779 0.89101 1.25816 0.94159 1.01479 0.93558 1.70054 0.98783 1.36772 1.29754 0.85954 0.79805 0.80516 0.78618 1.18350 1.19667 1.19670 1.84342 1.39976 1.15045 1.77059 0.89315 0.93522 0.93532 0.82758 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 10.78 101.05 1.09 1.69 14 2 O -0.28 -6.17 10.55 -40.49 -0.43 -6.59 14 3 C -0.02 -0.58 8.02 30.69 0.25 -0.33 14 4 C -0.02 -0.47 11.99 -17.14 -0.21 -0.68 14 5 N -0.52 -15.54 9.38 -12.97 -0.12 -15.66 14 6 C 0.33 9.69 7.71 -16.62 -0.13 9.56 14 7 C -0.44 -12.11 9.43 -38.37 -0.36 -12.47 14 8 H 0.09 2.34 7.85 -52.49 -0.41 1.93 14 9 C 0.07 1.93 5.50 -17.28 -0.10 1.84 14 10 N -0.73 -20.02 11.86 55.56 0.66 -19.36 14 11 Si 0.93 18.70 29.56 -169.99 -5.03 13.68 14 12 H -0.26 -5.09 7.11 56.52 0.40 -4.69 14 13 H -0.27 -5.34 7.11 56.52 0.40 -4.94 14 14 H -0.27 -5.34 7.11 56.52 0.40 -4.94 14 15 O -0.26 -7.36 10.36 -20.71 -0.21 -7.57 14 16 H 0.09 1.13 8.14 -51.93 -0.42 0.71 14 17 H 0.05 0.78 8.14 -51.93 -0.42 0.36 14 18 H 0.05 0.78 8.14 -51.93 -0.42 0.36 14 19 H 0.16 3.59 8.06 -52.49 -0.42 3.16 14 20 H 0.28 6.80 8.29 -40.82 -0.34 6.46 14 LS Contribution 195.09 15.07 2.94 2.94 Total: -1.00 -31.68 195.09 -2.88 -34.56 By element: Atomic # 1 Polarization: -0.35 SS G_CDS: -1.24 Total: -1.59 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: 0.55 Total: -0.40 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.54 Total: -35.02 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.64 Total: -14.17 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 2.94 Total: 2.94 kcal Total: -31.68 -2.88 -34.56 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213587868.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.348 kcal (2) G-P(sol) polarization free energy of solvation -31.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds