Wall clock time and date at job start Mon Mar 30 2020 02:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35241 * 116.99706 * 2 1 4 4 C 1.38115 * 126.48853 * 179.97438 * 3 2 1 5 5 N 1.32882 * 107.67907 * 179.97438 * 4 3 2 6 6 C 1.32898 * 108.83489 * 359.97438 * 5 4 3 7 7 C 1.39498 * 125.59616 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99664 * 180.02562 * 7 6 5 9 9 C 1.40221 * 120.00046 * 0.02562 * 7 6 5 10 10 N 1.30728 * 119.99764 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99927 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47024 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47110 * 119.99834 * 11 9 7 14 14 H 1.48506 * 109.46809 * 239.99915 * 11 9 7 15 15 O 1.34729 * 126.49644 * 359.95347 * 3 2 1 16 16 H 1.09004 * 109.47013 * 179.97438 * 1 2 3 17 17 H 1.08996 * 109.47526 * 300.00515 * 1 2 3 18 18 H 1.08999 * 109.46749 * 60.00418 * 1 2 3 19 19 H 1.07997 * 126.16206 * 359.70113 * 4 3 2 20 20 H 0.97005 * 119.99819 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0430 1.2050 0.0000 4 6 3.4052 1.4328 0.0005 5 7 3.5944 2.7481 -0.0003 6 6 2.4105 3.3519 -0.0018 7 6 2.2026 4.7313 -0.0024 8 1 1.1972 5.1257 -0.0033 9 6 3.2988 5.6056 -0.0020 10 7 4.5157 5.1280 -0.0005 11 14 3.0203 7.4527 -0.0022 12 1 1.5620 7.7334 -0.0034 13 1 3.6382 8.0466 1.2105 14 1 3.6393 8.0465 -1.2145 15 8 1.4417 2.4107 -0.0009 16 1 -0.3633 -1.0277 -0.0005 17 1 -0.3634 0.5139 0.8899 18 1 -0.3633 0.5138 -0.8900 19 1 4.1775 0.6779 0.0055 20 1 5.2741 5.7328 0.0002 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213587868.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:43 Heat of formation + Delta-G solvation = -47.913179 kcal Electronic energy + Delta-G solvation = -9414.254872 eV Core-core repulsion = 7384.236854 eV Total energy + Delta-G solvation = -2030.018018 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 169.053 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -43.10117 -39.08988 -35.82244 -34.60916 -30.88660 -28.71827 -26.32369 -23.07670 -22.43687 -19.64067 -18.83456 -17.51342 -17.38918 -16.09552 -15.77149 -15.61165 -14.64072 -13.56740 -13.44632 -12.98605 -12.90335 -12.68263 -12.28106 -11.92063 -11.78849 -11.08118 -10.43813 -9.06286 -8.59126 -6.57040 1.03826 1.43027 1.57076 1.62566 1.93083 2.25800 2.38773 3.00851 3.24917 4.25999 4.30157 4.36507 4.57484 4.68009 5.10713 5.42899 5.63187 6.05303 6.37177 6.59342 6.69685 7.86250 8.37500 Molecular weight = 169.05amu Principal moments of inertia in cm(-1) A = 0.107276 B = 0.013481 C = 0.012054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 260.946723 B = 2076.532351 C = 2322.335207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.280 6.280 3 C -0.013 4.013 4 C -0.045 4.045 5 N -0.554 5.554 6 C 0.294 3.706 7 C -0.462 4.462 8 H 0.103 0.897 9 C 0.028 3.972 10 N -0.771 5.771 11 Si 1.017 2.983 12 H -0.250 1.250 13 H -0.261 1.261 14 H -0.261 1.261 15 O -0.273 6.273 16 H 0.139 0.861 17 H 0.046 0.954 18 H 0.046 0.954 19 H 0.181 0.819 20 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.079 -0.541 0.004 5.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.195 6.195 3 C -0.109 4.109 4 C -0.187 4.187 5 N -0.287 5.287 6 C 0.110 3.890 7 C -0.498 4.498 8 H 0.121 0.879 9 C -0.193 4.193 10 N -0.396 5.396 11 Si 0.835 3.165 12 H -0.173 1.173 13 H -0.186 1.186 14 H -0.186 1.186 15 O -0.173 6.173 16 H 0.157 0.843 17 H 0.065 0.935 18 H 0.065 0.935 19 H 0.198 0.802 20 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.219 -0.421 0.005 4.240 hybrid contribution -0.878 -0.069 -0.001 0.881 sum -5.097 -0.489 0.005 5.120 Atomic orbital electron populations 1.23127 0.76990 1.05561 1.01240 1.86110 1.23216 1.18398 1.91792 1.21783 0.90688 0.78435 1.19975 1.23158 0.91095 0.94854 1.09623 1.71385 1.23844 1.02930 1.30508 1.22457 0.79141 0.90626 0.96795 1.18628 0.96793 0.84879 1.49467 0.87928 1.27056 0.93146 1.07130 0.91979 1.70139 1.00148 1.39543 1.29760 0.84660 0.80276 0.72416 0.79178 1.17255 1.18551 1.18556 1.84325 1.40061 1.15639 1.77267 0.84296 0.93482 0.93494 0.80212 0.90004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 10.78 113.37 1.22 2.02 14 2 O -0.28 -11.96 10.55 -63.18 -0.67 -12.63 14 3 C -0.01 -0.66 8.02 67.79 0.54 -0.12 14 4 C -0.04 -2.41 11.99 84.50 1.01 -1.39 14 5 N -0.55 -33.89 9.38 -307.81 -2.89 -36.77 14 6 C 0.29 17.73 7.71 84.84 0.65 18.38 14 7 C -0.46 -25.93 9.43 23.06 0.22 -25.71 14 8 H 0.10 5.28 7.85 -2.91 -0.02 5.25 14 9 C 0.03 1.43 5.50 85.34 0.47 1.90 14 10 N -0.77 -42.61 11.86 21.88 0.26 -42.35 14 11 Si 1.02 37.34 29.56 68.60 2.03 39.37 14 12 H -0.25 -8.65 7.11 99.48 0.71 -7.94 14 13 H -0.26 -9.09 7.11 99.48 0.71 -8.39 14 14 H -0.26 -9.10 7.11 99.48 0.71 -8.39 14 15 O -0.27 -15.33 10.36 7.60 0.08 -15.25 14 16 H 0.14 3.00 8.14 -2.39 -0.02 2.98 14 17 H 0.05 1.49 8.14 -2.39 -0.02 1.47 14 18 H 0.05 1.49 8.14 -2.39 -0.02 1.47 14 19 H 0.18 8.37 8.06 -2.91 -0.02 8.35 14 20 H 0.29 14.12 8.29 -92.70 -0.77 13.35 14 Total: -1.00 -68.59 195.09 4.18 -64.41 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: 1.25 Total: 8.15 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: 4.12 Total: -4.92 kcal Atomic # 7 Polarization: -76.50 SS G_CDS: -2.63 Total: -79.13 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.59 Total: -27.88 kcal Atomic # 14 Polarization: 37.34 SS G_CDS: 2.03 Total: 39.37 kcal Total: -68.59 4.18 -64.41 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213587868.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.495 kcal (2) G-P(sol) polarization free energy of solvation -68.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds