Wall clock time and date at job start Mon Mar 30 2020 02:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.33195 * 126.52839 * 2 1 4 4 N 1.20615 * 113.99185 * 180.31105 * 3 2 1 5 5 H 0.96995 * 124.14216 * 179.70645 * 4 3 2 6 6 C 1.34975 * 111.72204 * 359.70802 * 4 3 2 7 7 O 1.21843 * 127.67558 * 180.02562 * 6 4 3 8 8 C 1.39632 * 126.52700 * 179.81673 * 2 1 3 9 9 C 1.41248 * 128.65116 * 359.97438 * 8 2 1 10 10 H 1.08002 * 120.00475 * 334.91984 * 9 8 2 11 11 C 1.39744 * 120.00144 * 154.91515 * 9 8 2 12 12 N 1.31033 * 119.99748 * 335.15074 * 11 9 8 13 13 Si 1.86801 * 120.00151 * 155.14971 * 11 9 8 14 14 H 1.48503 * 109.47166 * 269.99736 * 13 11 9 15 15 H 1.48496 * 109.47190 * 30.00034 * 13 11 9 16 16 H 1.48506 * 109.46992 * 150.00215 * 13 11 9 17 17 H 1.09000 * 109.47557 * 270.18218 * 1 2 3 18 18 H 1.09002 * 109.46934 * 30.18642 * 1 2 3 19 19 H 1.09002 * 109.46963 * 150.18344 * 1 2 3 20 20 H 0.96997 * 119.99998 * 354.22494 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2998 1.0703 0.0000 4 7 3.4772 0.8085 -0.0060 5 1 4.1828 1.4740 -0.0110 6 6 3.6926 -0.5239 -0.0048 7 8 4.7635 -1.1051 -0.0092 8 6 2.3381 -1.1220 0.0036 9 6 1.9767 -2.4875 0.0084 10 1 1.0198 -2.7916 0.4063 11 6 2.8574 -3.4452 -0.5016 12 7 3.7535 -3.1019 -1.3939 13 14 2.7571 -5.2147 0.0885 14 1 3.6396 -5.3934 1.2694 15 1 1.3562 -5.5324 0.4648 16 1 3.1960 -6.1250 -0.9996 17 1 -0.3634 0.0033 1.0276 18 1 -0.3633 0.8883 -0.5167 19 1 -0.3633 -0.8916 -0.5110 20 1 3.7521 -2.2046 -1.7623 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213587954.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:26 Heat of formation + Delta-G solvation = -10.355786 kcal Electronic energy + Delta-G solvation = -9705.669150 eV Core-core repulsion = 7677.279743 eV Total energy + Delta-G solvation = -2028.389407 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 169.053 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -44.98885 -38.87367 -35.98925 -33.86807 -32.27747 -29.22717 -27.38760 -23.32567 -21.59621 -20.56772 -18.86516 -18.29439 -16.47749 -16.15538 -15.63696 -14.70156 -14.42712 -14.24943 -13.81067 -13.53481 -12.96958 -12.76162 -11.93344 -11.70716 -10.92649 -10.67285 -10.17268 -9.37868 -9.01014 -6.24085 0.74832 1.52859 1.60095 1.74770 1.80940 2.16498 2.42633 3.03454 3.21800 4.21733 4.59836 4.87493 4.93475 5.22817 5.40468 5.74570 5.86308 5.94116 6.52258 6.93072 7.17275 7.77884 8.18848 Molecular weight = 169.05amu Principal moments of inertia in cm(-1) A = 0.059973 B = 0.020164 C = 0.015998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.764127 B = 1388.301957 C = 1749.823187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 C -0.179 4.179 3 O -0.035 6.035 4 N -0.536 5.536 5 H 0.457 0.543 6 C 0.434 3.566 7 O -0.579 6.579 8 C -0.115 4.115 9 C -0.523 4.523 10 H 0.090 0.910 11 C -0.014 4.014 12 N -0.810 5.810 13 Si 1.125 2.875 14 H -0.278 1.278 15 H -0.245 1.245 16 H -0.274 1.274 17 H 0.074 0.926 18 H 0.083 0.917 19 H 0.074 0.926 20 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.971 3.444 2.179 7.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.230 4.230 3 O -0.053 6.053 4 N -0.227 5.227 5 H 0.309 0.691 6 C 0.231 3.769 7 O -0.465 6.465 8 C -0.122 4.122 9 C -0.552 4.552 10 H 0.108 0.892 11 C -0.229 4.229 12 N -0.433 5.433 13 Si 0.943 3.057 14 H -0.204 1.204 15 H -0.169 1.169 16 H -0.199 1.199 17 H 0.092 0.908 18 H 0.102 0.898 19 H 0.093 0.907 20 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.736 1.933 1.996 5.491 hybrid contribution 0.171 2.087 0.033 2.094 sum -4.565 4.019 2.029 6.412 Atomic orbital electron populations 1.19791 0.81994 1.03175 1.02604 1.23555 0.94312 0.82208 1.22879 1.83149 1.03728 1.31881 1.86585 1.42841 0.98082 1.09079 1.72671 0.69079 1.20866 0.92068 0.82699 0.81218 1.90781 1.31464 1.67102 1.57191 1.20278 0.90386 0.95594 1.05895 1.19680 1.05851 0.89752 1.39933 0.89246 1.28478 0.90948 1.11093 0.92408 1.70505 1.31358 1.22303 1.19171 0.82923 0.78484 0.67933 0.76405 1.20381 1.16867 1.19910 0.90774 0.89799 0.90702 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.62 10.32 71.24 0.74 0.11 14 2 C -0.18 -8.16 7.59 26.02 0.20 -7.97 14 3 O -0.04 -1.50 10.99 79.66 0.88 -0.62 14 4 N -0.54 -23.34 6.72 -174.94 -1.18 -24.52 14 5 H 0.46 15.62 8.96 -92.71 -0.83 14.79 14 6 C 0.43 24.09 7.70 86.82 0.67 24.76 14 7 O -0.58 -36.22 15.94 -4.81 -0.08 -36.30 14 8 C -0.11 -6.32 5.66 -19.59 -0.11 -6.44 14 9 C -0.52 -29.21 9.15 23.37 0.21 -29.00 14 10 H 0.09 4.63 7.95 -2.91 -0.02 4.61 14 11 C -0.01 -0.79 5.17 85.18 0.44 -0.34 14 12 N -0.81 -49.68 12.25 21.80 0.27 -49.41 14 13 Si 1.13 47.21 30.00 68.60 2.06 49.26 14 14 H -0.28 -11.58 7.11 99.48 0.71 -10.88 14 15 H -0.25 -8.87 7.11 99.48 0.71 -8.17 14 16 H -0.27 -11.16 7.11 99.48 0.71 -10.45 14 17 H 0.07 2.21 8.14 -2.39 -0.02 2.19 14 18 H 0.08 2.31 8.14 -2.39 -0.02 2.29 14 19 H 0.07 2.57 8.10 -2.39 -0.02 2.55 14 20 H 0.27 17.34 6.50 -92.71 -0.60 16.74 14 Total: -1.00 -71.48 190.60 4.70 -66.78 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.61 Total: 13.68 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: 2.14 Total: -18.87 kcal Atomic # 7 Polarization: -73.02 SS G_CDS: -0.91 Total: -73.93 kcal Atomic # 8 Polarization: -37.72 SS G_CDS: 0.80 Total: -36.93 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.06 Total: 49.26 kcal Total: -71.48 4.70 -66.78 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213587954.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.422 kcal (2) G-P(sol) polarization free energy of solvation -71.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds