Wall clock time and date at job start Mon Mar 30 2020 02:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99575 * 2 1 4 4 H 1.48504 * 109.46816 * 239.99684 * 3 2 1 5 5 H 1.48498 * 109.47294 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47325 * 120.00116 * 3 2 1 7 7 C 1.38809 * 120.00269 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00253 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00210 * 0.02562 * 7 2 1 10 10 C 1.48363 * 127.15595 * 0.02562 * 9 7 2 11 11 C 1.56011 * 104.97876 * 182.55785 * 10 9 7 12 12 H 1.08995 * 116.16247 * 158.69015 * 11 10 9 13 13 C 1.57079 * 99.67102 * 32.79750 * 11 10 9 14 14 C 1.49379 * 127.10639 * 179.97438 * 9 7 2 15 15 H 1.08991 * 117.06002 * 14.95410 * 14 9 7 16 16 C 1.57838 * 104.47326 * 244.42803 * 14 9 7 17 17 O 1.44118 * 105.26245 * 289.11851 * 16 14 9 18 18 H 0.96998 * 120.00434 * 0.02562 * 1 2 3 19 19 H 1.09000 * 110.37174 * 63.67303 * 10 9 7 20 20 H 1.09005 * 110.34242 * 301.42120 * 10 9 7 21 21 H 1.09002 * 112.46134 * 63.73560 * 13 11 10 22 22 H 1.08998 * 112.46080 * 191.33562 * 13 11 10 23 23 H 1.08999 * 110.66441 * 170.00583 * 16 14 9 24 24 H 1.08994 * 110.05930 * 47.91484 * 16 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6966 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1464 -2.5730 -0.0005 11 6 -0.3589 -4.1171 0.0673 12 1 -1.3294 -4.4531 0.4320 13 6 0.8894 -4.5174 0.9327 14 6 1.9069 -3.7641 0.0005 15 1 2.9637 -3.8560 0.2510 16 6 1.4527 -4.3842 -1.3780 17 8 0.0351 -4.6072 -1.2450 18 1 -0.4851 0.8400 -0.0004 19 1 -0.5787 -2.1710 -0.9169 20 1 -0.5895 -2.0912 0.8711 21 1 0.8527 -4.0950 1.9369 22 1 1.0574 -5.5943 0.9480 23 1 1.9673 -5.3269 -1.5640 24 1 1.6498 -3.6811 -2.1872 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219400168.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:53 Heat of formation + Delta-G solvation = -16.816068 kcal Electronic energy + Delta-G solvation = -10116.047005 eV Core-core repulsion = 8223.210554 eV Total energy + Delta-G solvation = -1892.836452 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 169.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.18405 -35.96237 -33.58577 -30.65321 -30.18307 -27.01973 -24.81993 -21.99681 -20.91349 -18.99603 -17.46142 -17.10516 -16.13076 -15.99050 -15.00468 -14.09379 -13.63545 -13.31820 -13.17361 -12.72611 -12.59380 -12.41937 -12.21405 -12.02272 -11.94267 -11.55651 -10.75736 -10.29546 -8.93860 -7.88412 -5.24772 1.44217 1.48257 1.54443 2.45876 2.97243 3.28255 3.45370 3.72387 3.97749 4.06416 4.19207 4.58059 4.84812 4.90343 4.96315 5.05267 5.18433 5.36455 5.39929 5.62514 5.98408 6.07124 6.98842 7.65466 8.37739 9.22920 Molecular weight = 169.08amu Principal moments of inertia in cm(-1) A = 0.086625 B = 0.016221 C = 0.015311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 323.155895 B = 1725.759357 C = 1828.370362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.072 4.072 3 Si 0.984 3.016 4 H -0.277 1.277 5 H -0.296 1.296 6 H -0.272 1.272 7 C -0.243 4.243 8 H 0.090 0.910 9 N -0.622 5.622 10 C 0.162 3.838 11 C 0.047 3.953 12 H 0.156 0.844 13 C -0.153 4.153 14 C 0.107 3.893 15 H 0.126 0.874 16 C 0.032 3.968 17 O -0.403 6.403 18 H 0.247 0.753 19 H 0.001 0.999 20 H 0.023 0.977 21 H 0.077 0.923 22 H 0.107 0.893 23 H 0.096 0.904 24 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.899 -7.977 1.527 8.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.264 4.264 3 Si 0.812 3.188 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.198 1.198 7 C -0.371 4.371 8 H 0.108 0.892 9 N -0.347 5.347 10 C 0.037 3.963 11 C -0.010 4.010 12 H 0.174 0.826 13 C -0.191 4.191 14 C 0.001 3.999 15 H 0.144 0.856 16 C -0.047 4.047 17 O -0.323 6.323 18 H 0.056 0.944 19 H 0.019 0.981 20 H 0.042 0.958 21 H 0.096 0.904 22 H 0.125 0.875 23 H 0.114 0.886 24 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.734 -7.801 1.363 8.378 hybrid contribution 0.182 1.426 -0.117 1.442 sum 2.916 -6.375 1.245 7.120 Atomic orbital electron populations 1.70148 1.06568 1.25515 1.58178 1.25752 0.96641 1.01370 1.02680 0.85071 0.77030 0.78369 0.78360 1.20313 1.22281 1.19819 1.19519 0.91199 0.83413 1.43014 0.89208 1.45653 1.02034 1.00897 1.86082 1.21984 0.84495 0.92218 0.97628 1.25372 0.99860 0.92871 0.82877 0.82639 1.24410 0.95207 1.01023 0.98502 1.24304 0.98458 0.84052 0.93134 0.85595 1.24451 0.81714 0.99645 0.98899 1.88872 1.24336 1.83032 1.36095 0.94391 0.98062 0.95844 0.90388 0.87455 0.88576 0.94495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.22 10.60 21.65 0.23 -58.99 14 2 C -0.07 -4.16 5.49 84.86 0.47 -3.70 14 3 Si 0.98 46.26 29.55 68.60 2.03 48.28 14 4 H -0.28 -12.55 7.11 99.48 0.71 -11.85 14 5 H -0.30 -14.12 7.11 99.48 0.71 -13.41 14 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 14 7 C -0.24 -13.72 10.39 84.03 0.87 -12.84 14 8 H 0.09 4.73 7.83 -2.91 -0.02 4.70 14 9 N -0.62 -32.42 3.08 -643.28 -1.98 -34.40 14 10 C 0.16 8.37 4.83 87.06 0.42 8.79 14 11 C 0.05 1.84 5.91 33.07 0.20 2.03 14 12 H 0.16 4.95 8.14 -2.39 -0.02 4.93 14 13 C -0.15 -5.13 6.84 33.51 0.23 -4.90 14 14 C 0.11 4.22 5.67 47.64 0.27 4.49 14 15 H 0.13 4.30 8.14 -2.39 -0.02 4.28 14 16 C 0.03 1.21 7.23 73.70 0.53 1.74 14 17 O -0.40 -16.68 11.26 -148.98 -1.68 -18.36 14 18 H 0.25 14.91 8.31 -92.71 -0.77 14.14 14 19 H 0.00 0.07 7.73 -2.39 -0.02 0.05 14 20 H 0.02 1.32 7.45 -2.38 -0.02 1.30 14 21 H 0.08 2.69 8.14 -2.39 -0.02 2.67 14 22 H 0.11 2.83 8.14 -2.39 -0.02 2.81 14 23 H 0.10 2.85 8.14 -2.39 -0.02 2.83 14 24 H 0.04 1.59 8.14 -2.39 -0.02 1.58 14 Total: -1.00 -68.03 202.33 2.76 -65.27 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: 1.17 Total: 2.58 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: 2.99 Total: -4.39 kcal Atomic # 7 Polarization: -91.63 SS G_CDS: -1.75 Total: -93.38 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -1.68 Total: -18.36 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.28 kcal Total: -68.03 2.76 -65.27 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219400168.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.457 kcal (2) G-P(sol) polarization free energy of solvation -68.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds