Wall clock time and date at job start Mon Mar 30 2020 02:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53950 * 113.74237 * 2 1 4 4 N 1.47925 * 85.99684 * 138.00209 * 3 2 1 5 5 C 1.34780 * 134.49772 * 155.35643 * 4 3 2 6 6 O 1.21692 * 119.99663 * 179.97438 * 5 4 3 7 7 C 1.46371 * 120.00152 * 359.97438 * 5 4 3 8 8 H 1.08001 * 120.00234 * 0.02562 * 7 5 4 9 9 C 1.40054 * 120.00026 * 179.97438 * 7 5 4 10 10 N 1.30671 * 119.99737 * 0.02562 * 9 7 5 11 11 Si 1.86796 * 120.00126 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46868 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47026 * 120.00332 * 11 9 7 14 14 H 1.48500 * 109.47243 * 240.00469 * 11 9 7 15 15 C 1.47579 * 91.00789 * 335.35638 * 4 3 2 16 16 H 1.09002 * 109.46943 * 321.26571 * 1 2 3 17 17 H 1.08998 * 109.46740 * 81.25996 * 1 2 3 18 18 H 1.08990 * 109.46939 * 201.25905 * 1 2 3 19 19 H 1.09002 * 112.94408 * 228.40417 * 2 1 3 20 20 H 1.09006 * 113.76402 * 252.36366 * 3 2 1 21 21 H 1.08997 * 113.76968 * 23.74991 * 3 2 1 22 22 H 0.96995 * 120.00297 * 179.97438 * 10 9 7 23 23 H 1.09003 * 113.77049 * 270.34039 * 15 4 3 24 24 H 1.08993 * 113.77081 * 138.93800 * 15 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1499 1.4092 0.0000 4 7 3.1121 0.8731 0.9874 5 6 4.3646 1.2025 1.3608 6 8 4.9286 0.5629 2.2290 7 6 5.0463 2.3293 0.7221 8 1 4.5456 2.8971 -0.0481 9 6 6.3476 2.6718 1.1105 10 7 6.9532 1.9850 2.0428 11 14 7.2174 4.1103 0.2960 12 1 6.3219 4.7189 -0.7203 13 1 7.5624 5.1259 1.3229 14 1 8.4590 3.6298 -0.3618 15 6 2.1498 -0.1672 1.3993 16 1 -0.3633 0.8017 0.6430 17 1 -0.3633 0.1562 -1.0157 18 1 -0.3633 -0.9577 0.3726 19 1 1.9550 -0.6664 -0.7507 20 1 2.6034 1.6896 -0.9507 21 1 1.4910 2.1790 0.4017 22 1 7.8546 2.2220 2.3116 23 1 1.4909 0.1406 2.2112 24 1 2.6033 -1.1443 1.5649 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225249784.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:42 Heat of formation + Delta-G solvation = -37.439266 kcal Electronic energy + Delta-G solvation = -9597.112162 eV Core-core repulsion = 7703.381422 eV Total energy + Delta-G solvation = -1893.730741 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 169.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.53022 -37.93105 -34.68570 -32.07971 -28.97295 -26.85837 -26.48395 -21.80495 -20.42603 -18.62109 -17.65896 -16.56580 -16.11158 -15.74831 -14.69702 -14.36966 -13.65104 -13.60640 -13.28839 -12.95184 -12.79834 -12.58239 -12.05110 -12.02125 -11.97401 -11.30783 -10.99413 -9.88449 -9.16890 -8.33786 -6.90760 1.36785 1.37805 1.56334 2.19825 2.39396 2.67083 3.52064 3.53593 4.19615 4.28371 4.52848 4.64183 4.68460 4.78002 5.05742 5.09688 5.20681 5.26822 5.30407 5.57474 5.93623 6.42382 6.81142 7.56338 8.40021 8.62663 Molecular weight = 169.08amu Principal moments of inertia in cm(-1) A = 0.084443 B = 0.013102 C = 0.011556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 331.505511 B = 2136.607011 C = 2422.321255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.102 4.102 3 C 0.111 3.889 4 N -0.687 5.687 5 C 0.552 3.448 6 O -0.639 6.639 7 C -0.565 4.565 8 H 0.084 0.916 9 C 0.024 3.976 10 N -0.824 5.824 11 Si 1.005 2.995 12 H -0.246 1.246 13 H -0.266 1.266 14 H -0.265 1.265 15 C 0.096 3.904 16 H 0.060 0.940 17 H 0.077 0.923 18 H 0.069 0.931 19 H 0.095 0.905 20 H 0.070 0.930 21 H 0.083 0.917 22 H 0.276 0.724 23 H 0.075 0.925 24 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.013 1.280 -6.912 12.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.121 4.121 3 C -0.011 4.011 4 N -0.426 5.426 5 C 0.360 3.640 6 O -0.527 6.527 7 C -0.601 4.601 8 H 0.102 0.898 9 C -0.191 4.191 10 N -0.454 5.454 11 Si 0.823 3.177 12 H -0.169 1.169 13 H -0.190 1.190 14 H -0.190 1.190 15 C -0.027 4.027 16 H 0.079 0.921 17 H 0.096 0.904 18 H 0.088 0.912 19 H 0.113 0.887 20 H 0.089 0.911 21 H 0.101 0.899 22 H 0.086 0.914 23 H 0.093 0.907 24 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.370 0.947 -6.273 11.316 hybrid contribution 0.697 0.327 0.184 0.791 sum -8.673 1.274 -6.090 10.674 Atomic orbital electron populations 1.21655 0.91231 1.02765 1.03217 1.23018 0.97523 0.96169 0.95428 1.23239 0.88737 0.96857 0.92313 1.50275 1.13048 1.35864 1.43422 1.18525 0.79071 0.84617 0.81825 1.90535 1.67033 1.57729 1.37379 1.21360 1.00770 1.14587 1.23423 0.89769 1.27111 0.97675 1.00135 0.94141 1.70205 1.12616 1.37508 1.25048 0.84882 0.77989 0.76151 0.78676 1.16911 1.19037 1.19003 1.23134 0.89543 0.91941 0.98129 0.92066 0.90422 0.91174 0.88672 0.91123 0.89883 0.91397 0.90657 0.93389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 9.71 71.98 0.70 -1.85 14 2 C -0.10 -2.96 4.54 -10.13 -0.05 -3.01 14 3 C 0.11 3.94 8.04 86.42 0.69 4.63 14 4 N -0.69 -33.96 3.62 -840.72 -3.04 -37.00 14 5 C 0.55 34.82 7.98 86.36 0.69 35.50 14 6 O -0.64 -46.27 15.75 -4.32 -0.07 -46.33 14 7 C -0.57 -33.93 9.33 24.83 0.23 -33.70 14 8 H 0.08 4.58 7.68 -2.91 -0.02 4.56 14 9 C 0.02 1.39 5.50 85.31 0.47 1.86 14 10 N -0.82 -52.46 11.83 21.84 0.26 -52.20 14 11 Si 1.00 42.12 29.56 68.60 2.03 44.15 14 12 H -0.25 -9.51 7.11 99.48 0.71 -8.80 14 13 H -0.27 -10.62 7.11 99.48 0.71 -9.92 14 14 H -0.27 -10.60 7.11 99.48 0.71 -9.90 14 15 C 0.10 3.71 8.40 86.49 0.73 4.44 14 16 H 0.06 1.16 7.98 -2.39 -0.02 1.14 14 17 H 0.08 1.22 8.14 -2.39 -0.02 1.20 14 18 H 0.07 1.20 8.14 -2.39 -0.02 1.18 14 19 H 0.10 2.70 8.14 -2.39 -0.02 2.68 14 20 H 0.07 2.44 8.14 -2.38 -0.02 2.42 14 21 H 0.08 2.60 7.99 -2.39 -0.02 2.58 14 22 H 0.28 15.73 8.29 -92.71 -0.77 14.96 14 23 H 0.08 2.66 8.10 -2.39 -0.02 2.64 14 24 H 0.05 1.97 8.14 -2.39 -0.02 1.95 14 Total: -1.00 -80.62 216.32 3.82 -76.80 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: 1.17 Total: 6.70 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: 3.46 Total: 7.88 kcal Atomic # 7 Polarization: -86.41 SS G_CDS: -2.78 Total: -89.20 kcal Atomic # 8 Polarization: -46.27 SS G_CDS: -0.07 Total: -46.33 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -80.62 3.82 -76.80 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225249784.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.361 kcal (2) G-P(sol) polarization free energy of solvation -80.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds