Wall clock time and date at job start Mon Mar 30 2020 02:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00430 * 2 1 4 4 H 1.48498 * 109.47051 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.46859 * 299.99534 * 3 2 1 6 6 H 1.48498 * 109.47296 * 59.99399 * 3 2 1 7 7 C 1.38811 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00212 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00206 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00636 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47474 * 180.02562 * 10 9 7 12 12 N 1.34497 * 126.28727 * 269.97418 * 11 10 9 13 13 C 1.31126 * 105.61473 * 180.02562 * 12 11 10 14 14 O 1.33644 * 106.89983 * 359.97438 * 13 12 11 15 15 N 1.21297 * 109.80913 * 0.02562 * 14 13 12 16 16 H 0.97008 * 119.99384 * 0.02562 * 1 2 3 17 17 H 0.97004 * 119.99464 * 0.02562 * 9 7 2 18 18 H 1.08999 * 109.47056 * 60.00116 * 10 9 7 19 19 H 1.09003 * 109.46948 * 300.00514 * 10 9 7 20 20 H 1.08005 * 126.55289 * 180.26876 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0579 -3.6569 0.0027 11 6 1.0786 -4.8022 0.0031 12 7 0.5612 -5.4068 1.0875 13 6 -0.2356 -6.3398 0.6249 14 8 -0.1786 -6.2733 -0.7087 15 7 0.5789 -5.3873 -1.0441 16 1 -0.4849 0.8402 -0.0004 17 1 0.3555 -2.3880 0.0016 18 1 2.6845 -3.7139 0.8928 19 1 2.6846 -3.7154 -0.8872 20 1 -0.8287 -7.0273 1.2097 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231807512.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:38 Heat of formation + Delta-G solvation = 84.455762 kcal Electronic energy + Delta-G solvation = -9199.747530 eV Core-core repulsion = 7207.762211 eV Total energy + Delta-G solvation = -1991.985319 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 169.059 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -45.28364 -36.04214 -34.30538 -32.23946 -30.73144 -26.65417 -23.85419 -23.16694 -21.51027 -17.92532 -17.68042 -16.97942 -15.49574 -14.73364 -13.84056 -13.32749 -12.74679 -12.19786 -11.93198 -11.42830 -10.95405 -10.86689 -10.73075 -10.12640 -9.96454 -9.62674 -8.97621 -7.03624 -5.81070 -3.12815 1.50827 2.59906 3.30023 3.42657 3.47652 3.50524 4.13140 4.51804 4.61428 5.42288 5.55245 5.95461 6.00428 6.26473 6.41027 6.52632 7.64739 8.34345 8.53266 9.46697 9.97237 10.33550 11.41702 Molecular weight = 169.06amu Principal moments of inertia in cm(-1) A = 0.120856 B = 0.010594 C = 0.010344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 231.624915 B = 2642.470345 C = 2706.276601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.010 4.010 3 Si 0.914 3.086 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.245 4.245 8 H 0.076 0.924 9 N -0.724 5.724 10 C 0.238 3.762 11 C 0.179 3.821 12 N -0.475 5.475 13 C 0.140 3.860 14 O 0.071 5.929 15 N -0.376 5.376 16 H 0.256 0.744 17 H 0.386 0.614 18 H 0.053 0.947 19 H 0.048 0.952 20 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.049 -11.262 1.060 11.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.744 3.256 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.375 4.375 8 H 0.094 0.906 9 N -0.370 5.370 10 C 0.109 3.891 11 C -0.095 4.095 12 N -0.208 5.208 13 C -0.101 4.101 14 O 0.012 5.988 15 N -0.083 5.083 16 H 0.066 0.934 17 H 0.220 0.780 18 H 0.071 0.929 19 H 0.066 0.934 20 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 0.615 -10.653 0.550 10.685 hybrid contribution -0.209 0.674 0.222 0.740 sum 0.406 -9.978 0.772 10.016 Atomic orbital electron populations 1.69698 1.05273 1.25794 1.57105 1.24796 0.95579 0.97890 1.02421 0.86025 0.78765 0.83582 0.77216 1.20352 1.21738 1.21717 1.19258 0.91211 0.83442 1.43619 0.90570 1.42225 1.05978 0.99013 1.89832 1.19025 0.89310 0.80293 1.00447 1.26442 1.00390 1.00165 0.82460 1.71917 1.10945 1.07630 1.30302 1.30445 0.98458 0.98625 0.82587 1.85290 1.47399 1.40705 1.25417 1.74682 1.07120 1.02433 1.24103 0.93377 0.78044 0.92895 0.93411 0.72584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.92 13.06 55.49 0.72 -28.19 14 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 14 3 Si 0.91 22.64 29.55 -169.99 -5.02 17.61 14 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 14 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 14 6 H -0.29 -7.20 7.11 56.52 0.40 -6.79 14 7 C -0.24 -7.02 9.99 -15.06 -0.15 -7.17 14 8 H 0.08 2.07 7.83 -52.48 -0.41 1.66 14 9 N -0.72 -19.54 5.59 -61.09 -0.34 -19.89 14 10 C 0.24 5.25 6.88 -5.20 -0.04 5.21 14 11 C 0.18 3.57 7.59 -156.37 -1.19 2.38 14 12 N -0.47 -8.39 11.55 -13.72 -0.16 -8.55 14 13 C 0.14 1.75 13.40 51.98 0.70 2.45 14 14 O 0.07 1.07 11.31 18.10 0.20 1.27 14 15 N -0.38 -7.16 12.16 30.87 0.38 -6.79 14 16 H 0.26 7.62 8.31 -40.82 -0.34 7.28 14 17 H 0.39 11.17 7.66 -40.82 -0.31 10.86 14 18 H 0.05 1.13 8.14 -51.93 -0.42 0.70 14 19 H 0.05 1.02 8.14 -51.93 -0.42 0.60 14 20 H 0.26 1.44 8.06 -52.48 -0.42 1.01 14 LS Contribution 196.04 15.07 2.95 2.95 Total: -1.00 -33.65 196.04 -3.16 -36.82 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -1.13 Total: 2.30 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -0.77 Total: 2.47 kcal Atomic # 7 Polarization: -64.02 SS G_CDS: 0.60 Total: -63.42 kcal Atomic # 8 Polarization: 1.07 SS G_CDS: 0.20 Total: 1.27 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 2.95 Total: 2.95 kcal Total: -33.65 -3.16 -36.82 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231807512.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.273 kcal (2) G-P(sol) polarization free energy of solvation -33.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds