Wall clock time and date at job start Mon Mar 30 2020 01:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 115.56482 * 2 1 4 4 C 1.52997 * 117.50084 * 145.69801 * 2 1 3 5 5 C 1.52997 * 60.03677 * 107.49737 * 4 2 1 6 6 H 1.08995 * 117.49799 * 107.47510 * 5 4 2 7 7 C 1.50694 * 117.50023 * 252.50367 * 5 4 2 8 8 O 1.21436 * 120.00257 * 43.60008 * 7 5 4 9 9 C 1.41026 * 119.99881 * 223.60659 * 7 5 4 10 10 H 1.08003 * 119.99967 * 353.73870 * 9 7 5 11 11 C 1.40462 * 120.00120 * 173.73551 * 9 7 5 12 12 N 1.30525 * 119.99878 * 6.25602 * 11 9 7 13 13 Si 1.86801 * 120.00236 * 186.26085 * 11 9 7 14 14 H 1.48497 * 109.47198 * 94.98255 * 13 11 9 15 15 H 1.48498 * 109.46915 * 214.98580 * 13 11 9 16 16 H 1.48504 * 109.46946 * 334.98619 * 13 11 9 17 17 H 1.09000 * 109.47194 * 325.69889 * 1 2 3 18 18 H 1.09000 * 109.47595 * 85.69534 * 1 2 3 19 19 H 1.09000 * 109.47202 * 205.70137 * 1 2 3 20 20 H 1.08995 * 109.47170 * 154.29596 * 3 2 1 21 21 H 1.09001 * 109.47128 * 274.30442 * 3 2 1 22 22 H 1.09008 * 109.46555 * 34.30110 * 3 2 1 23 23 H 1.08999 * 117.49887 * 359.97438 * 4 2 1 24 24 H 1.09000 * 117.49743 * 214.99999 * 4 2 1 25 25 H 0.96997 * 119.99384 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2364 -1.1211 0.7648 5 6 2.2371 -1.1216 -0.7652 6 1 3.1722 -0.8756 -1.2681 7 6 1.3732 -2.1415 -1.4610 8 8 0.2442 -2.3517 -1.0663 9 6 1.8759 -2.8521 -2.5706 10 1 2.8399 -2.5955 -2.9845 11 6 1.1230 -3.8936 -3.1374 12 7 -0.0912 -4.1244 -2.7178 13 14 1.8594 -4.9486 -4.4918 14 1 2.4504 -6.1747 -3.8981 15 1 0.7964 -5.3285 -5.4565 16 1 2.9170 -4.1810 -5.1973 17 1 -0.3633 0.8489 0.5791 18 1 -0.3634 0.0771 -1.0247 19 1 -0.3633 -0.9260 0.4457 20 1 3.1822 1.3084 0.4457 21 1 2.2774 1.7413 -1.0248 22 1 1.5810 2.0743 0.5792 23 1 1.6112 -1.8584 1.2683 24 1 3.1713 -0.8752 1.2684 25 1 -0.6109 -4.8439 -3.1090 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232898731.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:45 Heat of formation + Delta-G solvation = -51.996766 kcal Electronic energy + Delta-G solvation = -9594.616408 eV Core-core repulsion = 7765.680318 eV Total energy + Delta-G solvation = -1828.936090 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.11830 -37.20631 -34.65420 -30.53178 -28.93004 -28.23680 -24.64142 -21.29245 -19.54887 -18.45505 -17.20009 -15.92709 -15.29611 -14.79935 -14.62885 -14.33380 -13.59304 -13.30751 -13.14372 -12.93687 -12.69009 -12.57449 -12.21612 -12.06957 -11.97568 -11.02177 -10.75966 -10.41241 -9.39789 -8.26403 -7.05382 1.33249 1.36310 1.53336 2.09212 2.21384 2.89442 3.57003 3.89518 4.00496 4.28018 4.39100 4.76221 4.82836 4.83850 4.95528 5.05726 5.13370 5.19441 5.21523 5.29009 5.34684 5.69695 6.00300 6.74077 6.86648 8.32195 8.55126 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.084467 B = 0.013685 C = 0.012718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 331.409854 B = 2045.513972 C = 2201.150951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.114 4.114 3 C -0.103 4.103 4 C -0.148 4.148 5 C -0.206 4.206 6 H 0.107 0.893 7 C 0.364 3.636 8 O -0.581 6.581 9 C -0.565 4.565 10 H 0.080 0.920 11 C 0.026 3.974 12 N -0.791 5.791 13 Si 0.993 3.007 14 H -0.260 1.260 15 H -0.267 1.267 16 H -0.250 1.250 17 H 0.071 0.929 18 H 0.026 0.974 19 H 0.040 0.960 20 H 0.071 0.929 21 H 0.057 0.943 22 H 0.076 0.924 23 H 0.066 0.934 24 H 0.120 0.880 25 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.483 5.017 1.430 7.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.160 4.160 4 C -0.185 4.185 5 C -0.225 4.225 6 H 0.125 0.875 7 C 0.262 3.738 8 O -0.474 6.474 9 C -0.597 4.597 10 H 0.098 0.902 11 C -0.192 4.192 12 N -0.420 5.420 13 Si 0.812 3.188 14 H -0.185 1.185 15 H -0.192 1.192 16 H -0.173 1.173 17 H 0.090 0.910 18 H 0.045 0.955 19 H 0.059 0.941 20 H 0.090 0.910 21 H 0.076 0.924 22 H 0.094 0.906 23 H 0.085 0.915 24 H 0.138 0.862 25 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.787 4.873 1.651 7.028 hybrid contribution 0.122 -0.737 -0.630 0.977 sum 4.910 4.136 1.021 6.501 Atomic orbital electron populations 1.21123 0.93003 1.00811 1.00027 1.21635 0.94717 0.91843 1.03214 1.21331 1.00385 0.92102 1.02139 1.23032 1.02334 1.00849 0.92266 1.23135 1.02139 1.02003 0.95203 0.87528 1.19501 0.86655 0.82375 0.85275 1.90329 1.21780 1.67084 1.68169 1.21304 1.05658 1.17332 1.15360 0.90200 1.27233 0.94127 0.98360 0.99510 1.70092 1.09771 1.25419 1.36765 0.85074 0.78983 0.77997 0.76729 1.18458 1.19158 1.17270 0.91019 0.95503 0.94084 0.90966 0.92411 0.90550 0.91515 0.86203 0.90959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.96 8.18 71.98 0.59 -3.37 15 2 C -0.11 -4.48 2.70 -52.16 -0.14 -4.62 15 3 C -0.10 -2.94 9.85 71.98 0.71 -2.23 15 4 C -0.15 -5.86 9.43 30.59 0.29 -5.58 15 5 C -0.21 -9.55 5.78 -11.52 -0.07 -9.61 15 6 H 0.11 4.53 8.14 -2.39 -0.02 4.51 15 7 C 0.36 21.46 6.50 26.37 0.17 21.63 15 8 O -0.58 -38.05 12.27 -3.51 -0.04 -38.09 15 9 C -0.57 -32.86 9.22 23.50 0.22 -32.65 15 10 H 0.08 4.26 7.86 -2.91 -0.02 4.24 15 11 C 0.03 1.46 5.50 85.43 0.47 1.93 15 12 N -0.79 -47.79 11.75 21.91 0.26 -47.53 15 13 Si 0.99 40.67 29.57 68.60 2.03 42.70 15 14 H -0.26 -10.15 7.11 99.48 0.71 -9.44 15 15 H -0.27 -10.39 7.11 99.48 0.71 -9.68 15 16 H -0.25 -9.60 7.11 99.48 0.71 -8.90 15 17 H 0.07 2.44 7.92 -2.39 -0.02 2.42 15 18 H 0.03 1.25 7.97 -2.39 -0.02 1.23 15 19 H 0.04 2.00 6.56 -2.39 -0.02 1.98 15 20 H 0.07 1.77 7.90 -2.39 -0.02 1.75 15 21 H 0.06 1.63 8.14 -2.39 -0.02 1.61 15 22 H 0.08 1.85 7.92 -2.38 -0.02 1.83 15 23 H 0.07 2.95 8.05 -2.39 -0.02 2.93 15 24 H 0.12 3.76 8.05 -2.39 -0.02 3.74 15 25 H 0.28 15.13 8.29 -92.71 -0.77 14.36 15 Total: -1.00 -70.46 218.88 5.64 -64.82 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 1.16 Total: 12.59 kcal Atomic # 6 Polarization: -36.72 SS G_CDS: 2.24 Total: -34.48 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: 0.26 Total: -47.53 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -0.04 Total: -38.09 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -70.46 5.64 -64.82 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232898731.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.824 kcal (2) G-P(sol) polarization free energy of solvation -70.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds