Wall clock time and date at job start Mon Mar 30 2020 02:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 115.54983 * 2 1 4 4 C 1.53002 * 117.49763 * 145.66936 * 2 1 3 5 5 C 1.50701 * 117.49885 * 359.97438 * 4 2 1 6 6 H 1.07999 * 120.00219 * 125.85488 * 5 4 2 7 7 C 1.37879 * 120.00074 * 305.85193 * 5 4 2 8 8 N 1.31513 * 119.99870 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00078 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47345 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47324 * 120.00342 * 9 7 5 12 12 H 1.48503 * 109.47142 * 240.00132 * 9 7 5 13 13 C 1.53000 * 60.03389 * 107.47882 * 4 2 1 14 14 C 1.52996 * 117.49795 * 107.49729 * 13 4 2 15 15 C 1.52995 * 117.49744 * 252.52205 * 13 4 2 16 16 H 1.09006 * 109.47278 * 315.98836 * 1 2 3 17 17 H 1.09006 * 109.46932 * 75.98678 * 1 2 3 18 18 H 1.08997 * 109.47225 * 195.98799 * 1 2 3 19 19 H 1.09003 * 109.46881 * 154.27554 * 3 2 1 20 20 H 1.08990 * 109.47019 * 274.27261 * 3 2 1 21 21 H 1.08996 * 109.47198 * 34.28103 * 3 2 1 22 22 H 1.08999 * 117.49799 * 214.98198 * 4 2 1 23 23 H 0.97003 * 120.00118 * 179.97438 * 8 7 5 24 24 H 1.09000 * 109.47214 * 111.39420 * 14 13 4 25 25 H 1.08998 * 109.47648 * 231.38981 * 14 13 4 26 26 H 1.08997 * 109.47508 * 351.39667 * 14 13 4 27 27 H 1.08993 * 109.47238 * 8.61214 * 15 13 4 28 28 H 1.09007 * 109.46975 * 128.61094 * 15 13 4 29 29 H 1.08997 * 109.46922 * 248.60382 * 15 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2364 -1.1207 0.7654 5 6 1.3719 -2.1398 1.4621 6 1 1.5106 -3.1922 1.2629 7 6 0.4040 -1.7286 2.3538 8 7 0.2349 -0.4471 2.5959 9 14 -0.6679 -2.9917 3.2167 10 1 -0.2806 -4.3552 2.7738 11 1 -0.4825 -2.8775 4.6857 12 1 -2.0927 -2.7465 2.8772 13 6 2.2367 -1.1222 -0.7646 14 6 3.5494 -0.7781 -1.4711 15 6 1.3589 -2.1577 -1.4702 16 1 -0.3634 0.7391 0.7141 17 1 -0.3633 0.2489 -0.9971 18 1 -0.3633 -0.9879 0.2830 19 1 3.1819 1.3089 0.4461 20 1 2.2775 1.7412 -1.0247 21 1 1.5805 2.0744 0.5788 22 1 3.1715 -0.8747 1.2686 23 1 -0.4464 -0.1578 3.2230 24 1 3.9369 -1.6661 -1.9705 25 1 3.3710 0.0045 -2.2084 26 1 4.2757 -0.4277 -0.7378 27 1 0.7295 -2.6610 -0.7364 28 1 0.7297 -1.6588 -2.2074 29 1 1.9921 -2.8909 -1.9697 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238233503.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:26 Heat of formation + Delta-G solvation = -6.133574 kcal Electronic energy + Delta-G solvation = -10251.773954 eV Core-core repulsion = 8560.659736 eV Total energy + Delta-G solvation = -1691.114218 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.85934 -34.37714 -31.59601 -29.40393 -28.81313 -26.82375 -25.93641 -20.90188 -18.28753 -17.77645 -16.52638 -15.47699 -15.20680 -14.75351 -14.12347 -13.70864 -13.24621 -13.14406 -12.97647 -12.80403 -12.53752 -12.40116 -12.31774 -12.30234 -12.13881 -11.27136 -11.16171 -10.38226 -9.67214 -9.48418 -8.01558 -6.10219 1.39957 1.43745 1.53055 2.45784 3.22931 3.39876 4.30064 4.39585 4.44796 4.59265 4.73047 4.92780 4.95400 5.03212 5.13333 5.22314 5.29681 5.34933 5.41859 5.43963 5.50946 5.67977 5.81782 5.86810 5.96993 6.20312 6.47852 6.91355 7.52554 9.03719 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.057653 B = 0.018981 C = 0.016826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.546530 B = 1474.825981 C = 1663.651942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.107 4.107 3 C -0.093 4.093 4 C -0.007 4.007 5 C -0.508 4.508 6 H 0.047 0.953 7 C 0.031 3.969 8 N -0.893 5.893 9 Si 0.939 3.061 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.280 1.280 13 C -0.152 4.152 14 C -0.099 4.099 15 C -0.098 4.098 16 H 0.039 0.961 17 H 0.022 0.978 18 H 0.043 0.957 19 H 0.040 0.960 20 H 0.061 0.939 21 H 0.041 0.959 22 H 0.023 0.977 23 H 0.256 0.744 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.043 0.957 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.438 0.353 -5.851 6.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.107 4.107 3 C -0.150 4.150 4 C -0.025 4.025 5 C -0.546 4.546 6 H 0.066 0.934 7 C -0.170 4.170 8 N -0.531 5.531 9 Si 0.766 3.234 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.206 1.206 13 C -0.153 4.153 14 C -0.156 4.156 15 C -0.155 4.155 16 H 0.058 0.942 17 H 0.041 0.959 18 H 0.062 0.938 19 H 0.059 0.941 20 H 0.080 0.920 21 H 0.060 0.940 22 H 0.040 0.960 23 H 0.066 0.934 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.331 0.481 -5.745 5.916 hybrid contribution -0.606 -0.515 0.910 1.208 sum 0.725 -0.034 -4.835 4.889 Atomic orbital electron populations 1.20913 0.93655 1.01357 0.96278 1.21288 0.94265 0.90232 1.04920 1.21111 0.98697 0.94917 1.00305 1.20084 0.95501 0.97912 0.89013 1.20671 1.17545 0.92198 1.24164 0.93440 1.25501 0.97959 0.96506 0.96984 1.70236 1.33606 1.14731 1.34509 0.85797 0.79020 0.80143 0.78448 1.19548 1.20916 1.20636 1.21946 0.97979 1.00257 0.95078 1.21211 0.94196 1.01014 0.99160 1.21139 0.98550 0.97023 0.98756 0.94247 0.95876 0.93772 0.94105 0.92045 0.93959 0.95960 0.93436 0.92033 0.92075 0.93805 0.93323 0.93372 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -3.10 7.05 71.98 0.51 -2.59 15 2 C -0.11 -4.94 2.31 -52.15 -0.12 -5.06 15 3 C -0.09 -3.77 8.88 71.98 0.64 -3.13 15 4 C -0.01 -0.36 5.06 -11.54 -0.06 -0.42 15 5 C -0.51 -28.05 6.59 25.60 0.17 -27.88 15 6 H 0.05 2.64 7.70 -2.91 -0.02 2.62 15 7 C 0.03 1.70 4.01 84.66 0.34 2.04 15 8 N -0.89 -50.19 10.23 21.45 0.22 -49.97 15 9 Si 0.94 43.41 29.54 68.60 2.03 45.43 15 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 15 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 15 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 15 13 C -0.15 -6.49 2.70 -52.16 -0.14 -6.63 15 14 C -0.10 -3.41 8.88 71.98 0.64 -2.77 15 15 C -0.10 -3.90 8.66 71.98 0.62 -3.27 15 16 H 0.04 1.96 7.13 -2.38 -0.02 1.94 15 17 H 0.02 0.96 8.14 -2.38 -0.02 0.94 15 18 H 0.04 2.29 5.03 -2.39 -0.01 2.28 15 19 H 0.04 1.61 7.78 -2.39 -0.02 1.60 15 20 H 0.06 2.11 8.02 -2.39 -0.02 2.09 15 21 H 0.04 1.73 8.04 -2.39 -0.02 1.71 15 22 H 0.02 1.22 7.96 -2.39 -0.02 1.21 15 23 H 0.26 13.83 8.31 -92.71 -0.77 13.06 15 24 H 0.06 1.89 7.92 -2.39 -0.02 1.87 15 25 H 0.06 1.87 8.03 -2.39 -0.02 1.85 15 26 H 0.04 1.52 7.78 -2.39 -0.02 1.50 15 27 H 0.05 2.19 5.85 -2.39 -0.01 2.17 15 28 H 0.05 1.75 8.14 -2.38 -0.02 1.74 15 29 H 0.05 1.92 7.92 -2.39 -0.02 1.90 15 Total: -1.00 -57.52 229.01 5.94 -51.58 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: 1.09 Total: 2.66 kcal Atomic # 6 Polarization: -52.30 SS G_CDS: 2.60 Total: -49.70 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: 0.22 Total: -49.97 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -57.52 5.94 -51.58 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238233503.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.448 kcal (2) G-P(sol) polarization free energy of solvation -57.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds