Wall clock time and date at job start Mon Mar 30 2020 01:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 112.95421 * 2 1 4 4 C 1.53851 * 113.66450 * 131.41770 * 2 1 3 5 5 C 1.53843 * 86.80563 * 89.67317 * 4 2 1 6 6 H 1.09000 * 113.66797 * 270.22925 * 5 4 2 7 7 C 1.50706 * 113.66174 * 139.25615 * 5 4 2 8 8 H 1.07999 * 120.00196 * 0.02562 * 7 5 4 9 9 C 1.37879 * 119.99394 * 179.97438 * 7 5 4 10 10 N 1.31514 * 120.00338 * 359.97438 * 9 7 5 11 11 Si 1.86800 * 119.99426 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47555 * 90.00165 * 11 9 7 13 13 H 1.48503 * 109.46814 * 210.00053 * 11 9 7 14 14 H 1.48496 * 109.47318 * 329.99545 * 11 9 7 15 15 C 1.51576 * 86.75938 * 24.79158 * 5 4 2 16 16 O 1.20760 * 135.78210 * 154.86411 * 15 5 4 17 17 H 1.09003 * 109.46906 * 288.58023 * 1 2 3 18 18 H 1.08998 * 109.46837 * 48.57989 * 1 2 3 19 19 H 1.08999 * 109.47111 * 168.58143 * 1 2 3 20 20 H 1.09002 * 109.47183 * 191.42278 * 3 2 1 21 21 H 1.08999 * 109.47402 * 311.41267 * 3 2 1 22 22 H 1.08996 * 109.47464 * 71.41854 * 3 2 1 23 23 H 1.08997 * 113.65918 * 335.19538 * 4 2 1 24 24 H 1.08996 * 113.65368 * 204.15009 * 4 2 1 25 25 H 0.96996 * 119.99730 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1267 1.4088 0.0000 4 6 2.1475 -0.9322 1.0567 5 6 2.1051 -2.0345 -0.0157 6 1 1.1771 -2.6062 -0.0190 7 6 3.3324 -2.9089 -0.0331 8 1 4.1339 -2.7287 0.6680 9 6 3.4314 -3.9397 -0.9435 10 7 2.4547 -4.1601 -1.7962 11 14 4.9523 -5.0240 -0.9646 12 1 4.7495 -6.1791 -0.0537 13 1 5.1889 -5.5178 -2.3450 14 1 6.1276 -4.2372 -0.5122 15 6 2.1385 -0.9186 -1.0410 16 8 2.4949 -0.8090 -2.1896 17 1 -0.3633 0.3275 0.9741 18 1 -0.3633 0.6799 -0.7706 19 1 -0.3633 -1.0073 -0.2034 20 1 3.1959 1.3505 -0.2035 21 1 1.6425 2.0085 -0.7707 22 1 1.9669 1.8711 0.9740 23 1 1.4931 -1.1238 1.9070 24 1 3.1575 -0.6490 1.3531 25 1 2.5243 -4.8855 -2.4363 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238247270.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:50 Heat of formation + Delta-G solvation = -48.958800 kcal Electronic energy + Delta-G solvation = -9698.861537 eV Core-core repulsion = 7870.057183 eV Total energy + Delta-G solvation = -1828.804354 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.99972 -37.41671 -34.82063 -31.60210 -28.28470 -27.29055 -24.35971 -22.50670 -18.70139 -18.60963 -16.74724 -16.28806 -16.16048 -15.39131 -14.61407 -14.20377 -13.78918 -13.54570 -13.14319 -13.03925 -12.85075 -12.58273 -12.38027 -11.95838 -11.72210 -11.42982 -10.91103 -10.77382 -9.65363 -8.21992 -6.32117 1.34736 1.39602 1.43327 1.49823 2.39189 3.00111 3.36131 3.82149 4.18437 4.29393 4.62387 4.65212 4.81093 4.86398 4.99076 5.03830 5.12848 5.18581 5.25397 5.36045 5.58892 5.76752 6.14487 6.73386 7.07693 7.35562 8.87603 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.075321 B = 0.015069 C = 0.014726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.650708 B = 1857.716489 C = 1900.899920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.135 4.135 3 C -0.126 4.126 4 C -0.107 4.107 5 C -0.032 4.032 6 H 0.063 0.937 7 C -0.539 4.539 8 H 0.064 0.936 9 C 0.010 3.990 10 N -0.916 5.916 11 Si 0.960 3.040 12 H -0.264 1.264 13 H -0.287 1.287 14 H -0.266 1.266 15 C 0.345 3.655 16 O -0.492 6.492 17 H 0.097 0.903 18 H 0.065 0.935 19 H 0.045 0.955 20 H 0.038 0.962 21 H 0.062 0.938 22 H 0.090 0.910 23 H 0.097 0.903 24 H 0.076 0.924 25 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.414 7.012 6.329 9.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.136 4.136 3 C -0.183 4.183 4 C -0.144 4.144 5 C -0.051 4.051 6 H 0.081 0.919 7 C -0.576 4.576 8 H 0.083 0.917 9 C -0.190 4.190 10 N -0.554 5.554 11 Si 0.785 3.215 12 H -0.189 1.189 13 H -0.213 1.213 14 H -0.191 1.191 15 C 0.223 3.777 16 O -0.367 6.367 17 H 0.116 0.884 18 H 0.084 0.916 19 H 0.064 0.936 20 H 0.057 0.943 21 H 0.081 0.919 22 H 0.109 0.891 23 H 0.115 0.885 24 H 0.095 0.905 25 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.283 6.957 5.585 9.209 hybrid contribution 0.793 -0.906 -0.484 1.298 sum -1.490 6.052 5.101 8.054 Atomic orbital electron populations 1.21471 0.89617 1.01919 1.04003 1.23198 0.98637 0.96520 0.95226 1.21604 0.99547 0.93631 1.03488 1.22757 1.00733 0.94768 0.96159 1.21216 0.97907 0.94013 0.91977 0.91892 1.21355 1.03803 1.14300 1.18165 0.91736 1.25940 0.99440 0.98794 0.94848 1.70073 1.33972 1.31246 1.20124 0.85520 0.79555 0.79083 0.77361 1.18875 1.21328 1.19053 1.27554 0.69869 0.95263 0.85056 1.90151 1.42524 1.85096 1.18916 0.88411 0.91587 0.93559 0.94255 0.91936 0.89078 0.88503 0.90517 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.30 9.10 71.98 0.66 -2.65 15 2 C -0.13 -4.81 1.38 -52.36 -0.07 -4.89 15 3 C -0.13 -3.70 9.20 71.98 0.66 -3.04 15 4 C -0.11 -4.00 6.82 31.11 0.21 -3.79 15 5 C -0.03 -1.62 3.07 -11.72 -0.04 -1.66 15 6 H 0.06 3.38 7.69 -2.39 -0.02 3.36 15 7 C -0.54 -30.42 8.77 25.60 0.22 -30.19 15 8 H 0.06 3.49 7.81 -2.91 -0.02 3.47 15 9 C 0.01 0.58 5.46 84.66 0.46 1.04 15 10 N -0.92 -56.43 13.28 21.45 0.28 -56.14 15 11 Si 0.96 45.12 29.54 68.60 2.03 47.15 15 12 H -0.26 -11.65 7.11 99.48 0.71 -10.95 15 13 H -0.29 -13.50 7.11 99.48 0.71 -12.79 15 14 H -0.27 -12.08 7.11 99.48 0.71 -11.37 15 15 C 0.35 17.31 7.60 29.61 0.23 17.54 15 16 O -0.49 -28.66 17.99 -1.45 -0.03 -28.69 15 17 H 0.10 2.15 8.14 -2.39 -0.02 2.13 15 18 H 0.07 1.77 8.14 -2.39 -0.02 1.75 15 19 H 0.05 1.51 7.38 -2.39 -0.02 1.49 15 20 H 0.04 1.26 8.06 -2.39 -0.02 1.24 15 21 H 0.06 1.72 8.14 -2.39 -0.02 1.70 15 22 H 0.09 2.05 8.14 -2.39 -0.02 2.03 15 23 H 0.10 3.02 8.10 -2.39 -0.02 3.00 15 24 H 0.08 2.83 8.05 -2.39 -0.02 2.81 15 25 H 0.26 15.36 8.31 -92.71 -0.77 14.59 15 Total: -1.00 -68.63 221.50 5.77 -62.86 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: 1.16 Total: 2.46 kcal Atomic # 6 Polarization: -29.97 SS G_CDS: 2.33 Total: -27.64 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: 0.28 Total: -56.14 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -0.03 Total: -28.69 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -68.63 5.77 -62.86 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238247270.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.897 kcal (2) G-P(sol) polarization free energy of solvation -68.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds