Wall clock time and date at job start Mon Mar 30 2020 02:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00666 * 2 1 4 4 H 1.48499 * 109.47101 * 264.79596 * 3 2 1 5 5 H 1.48504 * 109.46827 * 24.79433 * 3 2 1 6 6 H 1.48499 * 109.47346 * 144.79396 * 3 2 1 7 7 C 1.37885 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99486 * 4.63349 * 7 2 1 9 9 C 1.50696 * 120.00176 * 184.63262 * 7 2 1 10 10 H 1.08996 * 109.60385 * 334.86521 * 9 7 2 11 11 C 1.53344 * 109.73497 * 214.45979 * 9 7 2 12 12 C 1.53070 * 108.42254 * 172.63640 * 11 9 7 13 13 C 1.50172 * 109.89283 * 48.89828 * 12 11 9 14 14 O 1.21288 * 118.24585 * 162.44489 * 13 12 11 15 15 N 1.33088 * 123.42579 * 342.23266 * 13 12 11 16 16 C 1.45747 * 124.30930 * 2.60752 * 15 13 12 17 17 H 0.97002 * 119.99273 * 0.02562 * 1 2 3 18 18 H 1.08997 * 109.67527 * 292.36469 * 11 9 7 19 19 H 1.08996 * 109.67665 * 52.89829 * 11 9 7 20 20 H 1.09002 * 109.40398 * 169.03120 * 12 11 9 21 21 H 1.09008 * 109.39906 * 288.85296 * 12 11 9 22 22 H 0.97005 * 117.74227 * 182.39114 * 15 13 12 23 23 H 1.08994 * 109.30284 * 220.38971 * 16 15 13 24 24 H 1.09002 * 109.29986 * 100.80949 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.6068 1.9827 -1.3943 5 1 1.3961 2.6819 0.5872 6 1 3.4875 1.4742 0.8072 7 6 2.0045 -1.1941 0.0005 8 1 1.4671 -2.1279 -0.0746 9 6 3.5078 -1.1963 0.1059 10 1 3.9019 -0.2506 -0.2661 11 6 4.0831 -2.3536 -0.7194 12 6 5.6077 -2.2195 -0.7434 13 6 6.1237 -2.0039 0.6503 14 8 7.3020 -2.1983 0.8626 15 7 5.3566 -1.6071 1.6629 16 6 3.9194 -1.3846 1.5666 17 1 -0.4849 0.8401 -0.0004 18 1 3.8055 -3.3035 -0.2628 19 1 3.6946 -2.3075 -1.7367 20 1 6.0448 -3.1294 -1.1547 21 1 5.8867 -1.3700 -1.3670 22 1 5.7830 -1.4596 2.5216 23 1 3.6543 -0.4923 2.1336 24 1 3.3932 -2.2444 1.9813 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259597828.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:23 Heat of formation + Delta-G solvation = -56.034993 kcal Electronic energy + Delta-G solvation = -9806.695388 eV Core-core repulsion = 7912.158277 eV Total energy + Delta-G solvation = -1894.537112 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 169.084 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.59580 -36.06871 -32.97990 -32.04862 -29.42150 -24.84818 -23.50499 -21.18022 -18.28916 -17.31465 -16.35118 -15.33947 -14.89292 -14.21716 -13.53002 -13.36515 -12.72930 -12.64060 -12.02395 -11.37504 -11.02153 -10.81136 -10.48990 -9.87511 -9.70841 -9.35186 -9.15158 -8.69086 -8.46057 -6.23841 -4.26325 3.14494 3.18368 3.27742 3.28801 3.93896 4.27544 5.05390 5.24190 5.53803 5.61399 5.94360 6.10849 6.12739 6.38880 6.52787 6.55019 7.06491 7.12537 7.30119 7.50128 7.91997 8.35559 8.72356 8.82098 9.37870 10.88603 Molecular weight = 169.08amu Principal moments of inertia in cm(-1) A = 0.069813 B = 0.015886 C = 0.014992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.975904 B = 1762.104990 C = 1867.241776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.075 3.925 3 Si 0.876 3.124 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.515 4.515 8 H 0.078 0.922 9 C 0.002 3.998 10 H 0.039 0.961 11 C -0.109 4.109 12 C -0.138 4.138 13 C 0.520 3.480 14 O -0.588 6.588 15 N -0.717 5.717 16 C 0.106 3.894 17 H 0.266 0.734 18 H 0.059 0.941 19 H 0.072 0.928 20 H 0.088 0.912 21 H 0.091 0.909 22 H 0.386 0.614 23 H 0.065 0.935 24 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.190 -0.841 0.624 6.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.128 4.128 3 Si 0.704 3.296 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.553 4.553 8 H 0.096 0.904 9 C -0.017 4.017 10 H 0.057 0.943 11 C -0.147 4.147 12 C -0.178 4.178 13 C 0.308 3.692 14 O -0.470 6.470 15 N -0.366 5.366 16 C -0.018 4.018 17 H 0.076 0.924 18 H 0.078 0.922 19 H 0.091 0.909 20 H 0.107 0.893 21 H 0.110 0.890 22 H 0.220 0.780 23 H 0.083 0.917 24 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.460 -0.853 0.507 6.535 hybrid contribution 0.343 1.078 0.405 1.202 sum 6.803 0.226 0.912 6.867 Atomic orbital electron populations 1.69895 1.06336 1.27298 1.49373 1.25100 0.94725 0.99038 0.93956 0.86882 0.80080 0.83643 0.79044 1.19950 1.21389 1.19075 1.20831 0.88193 0.94873 1.51445 0.90391 1.19439 0.97542 0.94917 0.89815 0.94308 1.21738 0.90913 1.00109 1.01976 1.21721 0.99096 1.03736 0.93263 1.20198 0.85646 0.75429 0.87909 1.90671 1.17369 1.54039 1.84952 1.45768 1.10931 1.67397 1.12459 1.22192 0.76760 1.00807 1.01997 0.92361 0.92242 0.90936 0.89307 0.89025 0.78026 0.91694 0.91792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.64 13.96 55.43 0.77 -24.87 14 2 C 0.08 2.01 5.47 -17.82 -0.10 1.91 14 3 Si 0.88 20.20 26.98 -169.99 -4.59 15.62 14 4 H -0.27 -6.27 7.11 56.52 0.40 -5.86 14 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 14 6 H -0.27 -5.87 6.75 56.52 0.38 -5.49 14 7 C -0.52 -13.20 8.87 -34.44 -0.31 -13.51 14 8 H 0.08 2.17 8.06 -52.49 -0.42 1.75 14 9 C 0.00 0.05 1.81 -91.64 -0.17 -0.12 14 10 H 0.04 0.85 5.31 -51.93 -0.28 0.58 14 11 C -0.11 -2.02 5.32 -26.52 -0.14 -2.16 14 12 C -0.14 -2.34 6.03 -28.10 -0.17 -2.51 14 13 C 0.52 9.94 7.71 -11.99 -0.09 9.85 14 14 O -0.59 -12.76 17.78 5.55 0.10 -12.66 14 15 N -0.72 -12.81 5.43 -61.46 -0.33 -13.14 14 16 C 0.11 2.03 6.47 -4.49 -0.03 2.00 14 17 H 0.27 7.20 8.31 -40.82 -0.34 6.86 14 18 H 0.06 1.07 8.13 -51.93 -0.42 0.65 14 19 H 0.07 1.31 8.14 -51.93 -0.42 0.89 14 20 H 0.09 1.34 8.14 -51.93 -0.42 0.92 14 21 H 0.09 1.46 8.14 -51.92 -0.42 1.03 14 22 H 0.39 6.13 8.79 -40.82 -0.36 5.77 14 23 H 0.06 1.24 8.06 -51.93 -0.42 0.82 14 24 H 0.06 1.21 8.11 -51.93 -0.42 0.78 14 LS Contribution 205.98 15.07 3.10 3.10 Total: -1.00 -29.36 205.98 -4.69 -34.05 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -2.74 Total: 2.45 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -1.00 Total: -4.54 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.44 Total: -38.01 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.10 Total: -12.66 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.59 Total: 15.62 kcal Total LS contribution 3.10 Total: 3.10 kcal Total: -29.36 -4.69 -34.05 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259597828.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.987 kcal (2) G-P(sol) polarization free energy of solvation -29.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds