Wall clock time and date at job start Mon Mar 30 2020 02:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00666 * 2 1 4 4 H 1.48499 * 109.47101 * 264.79596 * 3 2 1 5 5 H 1.48504 * 109.46827 * 24.79433 * 3 2 1 6 6 H 1.48499 * 109.47346 * 144.79396 * 3 2 1 7 7 C 1.37885 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99486 * 4.63349 * 7 2 1 9 9 C 1.50696 * 120.00176 * 184.63262 * 7 2 1 10 10 H 1.08996 * 109.60385 * 334.86521 * 9 7 2 11 11 C 1.53344 * 109.73497 * 214.45979 * 9 7 2 12 12 C 1.53070 * 108.42254 * 172.63640 * 11 9 7 13 13 C 1.50172 * 109.89283 * 48.89828 * 12 11 9 14 14 O 1.21288 * 118.24585 * 162.44489 * 13 12 11 15 15 N 1.33088 * 123.42579 * 342.23266 * 13 12 11 16 16 C 1.45747 * 124.30930 * 2.60752 * 15 13 12 17 17 H 0.97002 * 119.99273 * 0.02562 * 1 2 3 18 18 H 1.08997 * 109.67527 * 292.36469 * 11 9 7 19 19 H 1.08996 * 109.67665 * 52.89829 * 11 9 7 20 20 H 1.09002 * 109.40398 * 169.03120 * 12 11 9 21 21 H 1.09008 * 109.39906 * 288.85296 * 12 11 9 22 22 H 0.97005 * 117.74227 * 182.39114 * 15 13 12 23 23 H 1.08994 * 109.30284 * 220.38971 * 16 15 13 24 24 H 1.09002 * 109.29986 * 100.80949 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.6068 1.9827 -1.3943 5 1 1.3961 2.6819 0.5872 6 1 3.4875 1.4742 0.8072 7 6 2.0045 -1.1941 0.0005 8 1 1.4671 -2.1279 -0.0746 9 6 3.5078 -1.1963 0.1059 10 1 3.9019 -0.2506 -0.2661 11 6 4.0831 -2.3536 -0.7194 12 6 5.6077 -2.2195 -0.7434 13 6 6.1237 -2.0039 0.6503 14 8 7.3020 -2.1983 0.8626 15 7 5.3566 -1.6071 1.6629 16 6 3.9194 -1.3846 1.5666 17 1 -0.4849 0.8401 -0.0004 18 1 3.8055 -3.3035 -0.2628 19 1 3.6946 -2.3075 -1.7367 20 1 6.0448 -3.1294 -1.1547 21 1 5.8867 -1.3700 -1.3670 22 1 5.7830 -1.4596 2.5216 23 1 3.6543 -0.4923 2.1336 24 1 3.3932 -2.2444 1.9813 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259597828.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:23 Heat of formation + Delta-G solvation = -77.250753 kcal Electronic energy + Delta-G solvation = -9807.615373 eV Core-core repulsion = 7912.158277 eV Total energy + Delta-G solvation = -1895.457096 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 169.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.11730 -37.69959 -34.79846 -33.68844 -31.09834 -26.66054 -25.03253 -22.81513 -19.85674 -19.20712 -17.96701 -16.84314 -16.50396 -16.01418 -15.17482 -14.85876 -14.56460 -14.17521 -13.63326 -13.09677 -12.80570 -12.34564 -12.10037 -11.70694 -11.37177 -11.21979 -10.77118 -10.61511 -9.98452 -8.28720 -6.34862 1.37765 1.41052 1.48993 1.66363 2.34975 2.48234 3.08157 3.77593 4.07956 4.18096 4.36348 4.62830 4.71796 4.80958 5.03186 5.06305 5.47833 5.52916 5.60044 5.88787 6.26579 6.45359 6.76774 7.26059 7.32964 8.87286 Molecular weight = 169.08amu Principal moments of inertia in cm(-1) A = 0.069813 B = 0.015886 C = 0.014992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.975904 B = 1762.104990 C = 1867.241776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.020 3.980 3 Si 0.937 3.063 4 H -0.268 1.268 5 H -0.291 1.291 6 H -0.246 1.246 7 C -0.512 4.512 8 H 0.042 0.958 9 C -0.003 4.003 10 H 0.039 0.961 11 C -0.104 4.104 12 C -0.131 4.131 13 C 0.517 3.483 14 O -0.614 6.614 15 N -0.708 5.708 16 C 0.115 3.885 17 H 0.267 0.733 18 H 0.060 0.940 19 H 0.074 0.926 20 H 0.111 0.889 21 H 0.107 0.893 22 H 0.398 0.602 23 H 0.068 0.932 24 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.826 -0.389 0.577 7.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.193 1.193 5 H -0.217 1.217 6 H -0.170 1.170 7 C -0.550 4.550 8 H 0.060 0.940 9 C -0.022 4.022 10 H 0.057 0.943 11 C -0.142 4.142 12 C -0.170 4.170 13 C 0.305 3.695 14 O -0.499 6.499 15 N -0.357 5.357 16 C -0.009 4.009 17 H 0.076 0.924 18 H 0.079 0.921 19 H 0.093 0.907 20 H 0.130 0.870 21 H 0.125 0.875 22 H 0.233 0.767 23 H 0.087 0.913 24 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.114 -0.412 0.472 8.138 hybrid contribution -0.200 0.847 0.423 0.968 sum 7.914 0.436 0.895 7.976 Atomic orbital electron populations 1.70037 1.08239 1.28184 1.51777 1.25888 0.95300 1.02691 0.93928 0.85900 0.79333 0.79138 0.79494 1.19331 1.21738 1.16978 1.21037 0.90525 0.93341 1.50085 0.93990 1.19432 0.94722 0.96259 0.91814 0.94250 1.21624 0.92185 0.98839 1.01548 1.21716 0.97384 1.05598 0.92334 1.20563 0.85287 0.74893 0.88711 1.90671 1.18466 1.55333 1.85413 1.45618 1.10208 1.66808 1.13066 1.21899 0.77489 1.01167 1.00344 0.92414 0.92145 0.90693 0.87040 0.87484 0.76708 0.91327 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.10 13.96 21.45 0.30 -54.80 14 2 C 0.02 1.08 5.47 84.66 0.46 1.55 14 3 Si 0.94 40.70 26.98 68.60 1.85 42.55 14 4 H -0.27 -11.35 7.11 99.48 0.71 -10.64 14 5 H -0.29 -12.73 7.11 99.48 0.71 -12.03 14 6 H -0.25 -9.80 6.75 99.48 0.67 -9.13 14 7 C -0.51 -26.11 8.87 25.60 0.23 -25.88 14 8 H 0.04 2.39 8.06 -2.91 -0.02 2.37 14 9 C 0.00 -0.12 1.81 -11.45 -0.02 -0.14 14 10 H 0.04 1.61 5.31 -2.39 -0.01 1.60 14 11 C -0.10 -3.60 5.32 30.73 0.16 -3.43 14 12 C -0.13 -3.97 6.03 29.71 0.18 -3.79 14 13 C 0.52 18.16 7.71 87.75 0.68 18.83 14 14 O -0.61 -25.02 17.78 -3.05 -0.05 -25.07 14 15 N -0.71 -23.26 5.43 -467.68 -2.54 -25.80 14 16 C 0.11 4.13 6.47 86.50 0.56 4.69 14 17 H 0.27 14.68 8.31 -92.71 -0.77 13.91 14 18 H 0.06 2.06 8.13 -2.39 -0.02 2.04 14 19 H 0.07 2.55 8.14 -2.39 -0.02 2.53 14 20 H 0.11 2.93 8.14 -2.39 -0.02 2.91 14 21 H 0.11 2.98 8.14 -2.38 -0.02 2.96 14 22 H 0.40 11.49 8.79 -92.70 -0.82 10.68 14 23 H 0.07 2.44 8.06 -2.39 -0.02 2.42 14 24 H 0.07 2.36 8.11 -2.39 -0.02 2.34 14 Total: -1.00 -61.49 205.98 2.15 -59.34 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 0.35 Total: 11.96 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: 2.25 Total: -8.18 kcal Atomic # 7 Polarization: -78.36 SS G_CDS: -2.24 Total: -80.60 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.05 Total: -25.07 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 1.85 Total: 42.55 kcal Total: -61.49 2.15 -59.34 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259597828.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.910 kcal (2) G-P(sol) polarization free energy of solvation -61.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds