Wall clock time and date at job start Mon Mar 30 2020 02:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00051 * 2 1 4 4 H 1.48495 * 109.47472 * 240.00086 * 3 2 1 5 5 H 1.48500 * 109.47143 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47364 * 119.99805 * 3 2 1 7 7 C 1.37878 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99850 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00213 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.73624 * 60.40591 * 9 7 2 11 11 C 1.53266 * 109.42586 * 180.87414 * 9 7 2 12 12 C 1.53069 * 108.24899 * 187.48520 * 11 9 7 13 13 C 1.50172 * 109.89086 * 311.03789 * 12 11 9 14 14 O 1.21286 * 118.24124 * 197.60084 * 13 12 11 15 15 N 1.33349 * 123.51198 * 17.57860 * 13 12 11 16 16 C 1.45752 * 124.10697 * 357.77833 * 15 13 12 17 17 H 0.96997 * 120.00281 * 359.97438 * 1 2 3 18 18 H 1.09008 * 109.81606 * 67.78003 * 11 9 7 19 19 H 1.08997 * 109.73811 * 307.15604 * 11 9 7 20 20 H 1.09001 * 109.39938 * 190.90467 * 12 11 9 21 21 H 1.09003 * 109.39981 * 71.16577 * 12 11 9 22 22 H 0.96998 * 117.94781 * 177.80465 * 15 13 12 23 23 H 1.09002 * 109.30196 * 139.38740 * 16 15 13 24 24 H 1.08998 * 109.29923 * 258.96873 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 1 0.6286 -2.5640 -0.8941 11 6 2.2479 -3.6632 0.0200 12 6 1.4675 -4.9661 -0.1710 13 6 0.2965 -5.0027 0.7685 14 8 -0.2318 -6.0726 0.9857 15 7 -0.1932 -3.9219 1.3770 16 6 0.3703 -2.5842 1.2455 17 1 -0.4850 0.8400 0.0004 18 1 2.7699 -3.6850 0.9767 19 1 2.9690 -3.5454 -0.7888 20 1 2.1222 -5.8134 0.0331 21 1 1.1093 -5.0263 -1.1987 22 1 -0.9731 -4.0331 1.9429 23 1 -0.4392 -1.8586 1.1651 24 1 0.9706 -2.3579 2.1267 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259597832.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:25 Heat of formation + Delta-G solvation = -57.972468 kcal Electronic energy + Delta-G solvation = -9795.338653 eV Core-core repulsion = 7900.717526 eV Total energy + Delta-G solvation = -1894.621127 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 169.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.33504 -35.85663 -32.84439 -31.97544 -28.70181 -24.81391 -23.30933 -21.19642 -18.19481 -16.83134 -15.90828 -15.17452 -14.67256 -14.38730 -13.23777 -13.05441 -12.65762 -12.39662 -11.51239 -11.10238 -10.84833 -10.80318 -10.57487 -10.09655 -9.43701 -9.22047 -8.90049 -8.65504 -8.08929 -6.18234 -4.24944 3.23574 3.29292 3.31380 3.35071 4.20154 4.31958 5.13217 5.46847 5.72836 5.79113 6.12189 6.39366 6.51774 6.74595 6.75894 6.79883 7.42180 7.59366 7.63162 7.82680 8.05606 8.31539 8.79741 8.95665 9.41821 10.88934 Molecular weight = 169.08amu Principal moments of inertia in cm(-1) A = 0.097080 B = 0.013682 C = 0.012523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 288.351794 B = 2046.026744 C = 2235.321890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.063 3.937 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.517 4.517 8 H 0.061 0.939 9 C 0.036 3.964 10 H 0.036 0.964 11 C -0.115 4.115 12 C -0.134 4.134 13 C 0.518 3.482 14 O -0.596 6.596 15 N -0.713 5.713 16 C 0.106 3.894 17 H 0.265 0.735 18 H 0.055 0.945 19 H 0.063 0.937 20 H 0.084 0.916 21 H 0.090 0.910 22 H 0.385 0.615 23 H 0.101 0.899 24 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.179 -2.160 0.823 3.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.555 4.555 8 H 0.080 0.920 9 C 0.017 3.983 10 H 0.054 0.946 11 C -0.153 4.153 12 C -0.174 4.174 13 C 0.306 3.694 14 O -0.479 6.479 15 N -0.361 5.361 16 C -0.016 4.016 17 H 0.074 0.926 18 H 0.074 0.926 19 H 0.082 0.918 20 H 0.102 0.898 21 H 0.109 0.891 22 H 0.218 0.782 23 H 0.119 0.881 24 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.969 -2.502 0.785 3.279 hybrid contribution 0.120 1.069 0.234 1.101 sum 2.089 -1.433 1.019 2.730 Atomic orbital electron populations 1.69831 1.05981 1.27131 1.50096 1.25029 0.94934 0.99439 0.94546 0.86564 0.79548 0.82635 0.78751 1.20143 1.21244 1.20151 1.21044 0.93120 0.89844 1.51493 0.92029 1.18952 0.92757 0.92883 0.93744 0.94638 1.21766 0.98747 0.93432 1.01319 1.21645 0.95697 1.00732 0.99324 1.20223 0.85123 0.83223 0.80867 1.90647 1.62148 1.29478 1.65593 1.45885 1.32213 1.09931 1.48068 1.21989 0.99937 0.79934 0.99758 0.92560 0.92642 0.91805 0.89782 0.89136 0.78210 0.88108 0.93553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.78 11.44 55.43 0.63 -23.15 14 2 C 0.06 1.61 5.31 -17.82 -0.09 1.52 14 3 Si 0.90 20.02 29.54 -169.99 -5.02 15.00 14 4 H -0.28 -6.13 7.11 56.52 0.40 -5.73 14 5 H -0.29 -6.41 7.11 56.52 0.40 -6.00 14 6 H -0.28 -6.10 7.11 56.52 0.40 -5.69 14 7 C -0.52 -13.11 8.54 -34.44 -0.29 -13.41 14 8 H 0.06 1.53 7.74 -52.48 -0.41 1.13 14 9 C 0.04 0.82 2.17 -91.67 -0.20 0.62 14 10 H 0.04 0.90 8.12 -51.93 -0.42 0.48 14 11 C -0.11 -2.24 5.26 -26.56 -0.14 -2.38 14 12 C -0.13 -2.45 6.02 -28.10 -0.17 -2.62 14 13 C 0.52 10.78 7.71 -11.88 -0.09 10.69 14 14 O -0.60 -13.85 17.78 5.55 0.10 -13.75 14 15 N -0.71 -14.33 5.45 -61.39 -0.33 -14.66 14 16 C 0.11 2.34 6.12 -4.48 -0.03 2.31 14 17 H 0.26 6.78 8.31 -40.82 -0.34 6.44 14 18 H 0.05 1.06 8.13 -51.92 -0.42 0.64 14 19 H 0.06 1.18 8.14 -51.93 -0.42 0.76 14 20 H 0.08 1.37 8.14 -51.93 -0.42 0.94 14 21 H 0.09 1.56 8.14 -51.93 -0.42 1.14 14 22 H 0.38 7.04 8.80 -40.82 -0.36 6.68 14 23 H 0.10 2.41 6.37 -51.93 -0.33 2.08 14 24 H 0.05 1.02 8.11 -51.93 -0.42 0.60 14 LS Contribution 206.66 15.07 3.11 3.11 Total: -1.00 -27.97 206.66 -5.29 -33.26 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -2.76 Total: 3.45 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -1.02 Total: -3.26 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.30 Total: -37.81 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: 0.10 Total: -13.75 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 3.11 Total: 3.11 kcal Total: -27.97 -5.29 -33.26 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259597832.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.712 kcal (2) G-P(sol) polarization free energy of solvation -27.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds