Wall clock time and date at job start Mon Mar 30 2020 02:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99753 * 2 1 4 4 H 1.48497 * 109.47122 * 269.99901 * 3 2 1 5 5 H 1.48508 * 109.47020 * 30.00066 * 3 2 1 6 6 H 1.48501 * 109.46904 * 149.99833 * 3 2 1 7 7 C 1.37870 * 120.00341 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99983 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00439 * 180.02562 * 7 2 1 10 10 C 1.50689 * 109.47542 * 179.97438 * 9 7 2 11 11 C 1.37810 * 121.56072 * 124.99529 * 10 9 7 12 12 C 1.35139 * 114.76145 * 179.73170 * 11 10 9 13 13 S 1.72056 * 105.50405 * 0.25248 * 12 11 10 14 14 N 1.30093 * 121.56243 * 305.22680 * 10 9 7 15 15 H 0.97001 * 120.00238 * 0.02562 * 1 2 3 16 16 H 1.08999 * 109.46960 * 59.99783 * 9 7 2 17 17 H 1.09004 * 109.46805 * 300.00502 * 9 7 2 18 18 H 1.08002 * 122.62113 * 0.02562 * 11 10 9 19 19 H 1.07999 * 127.24681 * 180.27022 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1940 0.0000 10 6 4.0139 -2.6147 -0.0001 11 6 4.8897 -3.0700 -0.9618 12 6 5.2550 -4.3641 -0.8276 13 16 4.4200 -4.9357 0.5640 14 7 3.6378 -3.4700 0.9051 15 1 -0.4850 0.8400 -0.0004 16 1 3.8745 -0.6807 0.8905 17 1 3.8752 -0.6794 -0.8895 18 1 5.2592 -2.4403 -1.7577 19 1 5.9292 -4.9220 -1.4604 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259766830.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:27 Heat of formation + Delta-G solvation = 33.231770 kcal Electronic energy + Delta-G solvation = -7419.302839 eV Core-core repulsion = 5835.556401 eV Total energy + Delta-G solvation = -1583.746438 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 169.026 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -38.39499 -32.94949 -30.80725 -29.38398 -24.45497 -21.58285 -18.70638 -17.60377 -16.71002 -15.01351 -14.15059 -13.47643 -13.07492 -12.72058 -12.03246 -11.82704 -10.86801 -10.74702 -10.49424 -10.06429 -9.61467 -9.39271 -9.10360 -8.59405 -7.98286 -6.06990 -4.06415 1.29860 2.08202 2.52319 3.18518 3.28103 3.36020 3.37391 4.40105 5.13104 5.26166 5.75566 5.82837 6.17441 6.55173 6.70131 6.97871 7.48859 7.68871 8.48026 8.99501 9.50893 11.06187 Molecular weight = 169.03amu Principal moments of inertia in cm(-1) A = 0.094333 B = 0.013378 C = 0.012375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 296.750916 B = 2092.457474 C = 2262.144061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.511 4.511 8 H 0.077 0.923 9 C 0.047 3.953 10 C 0.153 3.847 11 C -0.191 4.191 12 C -0.213 4.213 13 S 0.173 5.827 14 N -0.430 5.430 15 H 0.265 0.735 16 H 0.043 0.957 17 H 0.036 0.964 18 H 0.152 0.848 19 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.655 -5.075 -1.978 11.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.133 4.133 3 Si 0.704 3.296 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.550 4.550 8 H 0.095 0.905 9 C 0.005 3.995 10 C -0.026 4.026 11 C -0.227 4.227 12 C -0.361 4.361 13 S 0.326 5.674 14 N -0.249 5.249 15 H 0.075 0.925 16 H 0.061 0.939 17 H 0.055 0.945 18 H 0.169 0.831 19 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 9.682 -6.210 -0.290 11.506 hybrid contribution 0.956 1.958 -1.510 2.651 sum 10.637 -4.252 -1.800 11.596 Atomic orbital electron populations 1.69895 1.06240 1.26987 1.50506 1.24973 0.94806 0.98959 0.94530 0.86819 0.80422 0.83717 0.78630 1.20037 1.21089 1.18907 1.20891 0.87746 0.95044 1.51270 0.90487 1.18632 0.98230 0.84506 0.98134 1.22041 0.91756 0.99308 0.89453 1.21449 1.02307 0.95921 1.03027 1.26369 1.05948 0.99433 1.04385 1.83869 1.38789 1.22858 1.21905 1.77062 1.22273 0.99126 1.26405 0.92536 0.93922 0.94541 0.83061 0.80799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.80 13.96 55.43 0.77 -27.02 13 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 13 3 Si 0.88 21.11 27.47 -169.99 -4.67 16.44 13 4 H -0.27 -6.40 7.11 56.52 0.40 -5.99 13 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 13 6 H -0.26 -6.05 6.54 56.52 0.37 -5.68 13 7 C -0.51 -14.80 9.51 -34.44 -0.33 -15.13 13 8 H 0.08 2.49 7.95 -52.48 -0.42 2.07 13 9 C 0.05 1.13 4.51 -29.04 -0.13 1.00 13 10 C 0.15 3.34 6.03 -83.49 -0.50 2.84 13 11 C -0.19 -3.34 9.90 -40.84 -0.40 -3.75 13 12 C -0.21 -3.20 11.42 29.63 0.34 -2.87 13 13 S 0.17 2.98 23.72 -107.50 -2.55 0.43 13 14 N -0.43 -9.75 11.82 32.03 0.38 -9.37 13 15 H 0.26 7.61 8.31 -40.82 -0.34 7.27 13 16 H 0.04 1.03 7.20 -51.93 -0.37 0.66 13 17 H 0.04 0.81 7.43 -51.93 -0.39 0.42 13 18 H 0.15 2.24 8.06 -52.49 -0.42 1.82 13 19 H 0.17 1.88 8.06 -52.49 -0.42 1.46 13 LS Contribution 191.57 15.07 2.89 2.89 Total: -1.00 -31.56 191.57 -5.49 -37.05 By element: Atomic # 1 Polarization: -3.23 SS G_CDS: -1.19 Total: -4.42 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -1.13 Total: -15.99 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 1.15 Total: -36.39 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Atomic # 16 Polarization: 2.98 SS G_CDS: -2.55 Total: 0.43 kcal Total LS contribution 2.89 Total: 2.89 kcal Total: -31.56 -5.49 -37.05 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259766830.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.281 kcal (2) G-P(sol) polarization free energy of solvation -31.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds