Wall clock time and date at job start Mon Mar 30 2020 02:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99753 * 2 1 4 4 H 1.48497 * 109.47122 * 269.99901 * 3 2 1 5 5 H 1.48508 * 109.47020 * 30.00066 * 3 2 1 6 6 H 1.48501 * 109.46904 * 149.99833 * 3 2 1 7 7 C 1.37870 * 120.00341 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99983 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00439 * 180.02562 * 7 2 1 10 10 C 1.50689 * 109.47542 * 179.97438 * 9 7 2 11 11 C 1.37810 * 121.56072 * 124.99529 * 10 9 7 12 12 C 1.35139 * 114.76145 * 179.73170 * 11 10 9 13 13 S 1.72056 * 105.50405 * 0.25248 * 12 11 10 14 14 N 1.30093 * 121.56243 * 305.22680 * 10 9 7 15 15 H 0.97001 * 120.00238 * 0.02562 * 1 2 3 16 16 H 1.08999 * 109.46960 * 59.99783 * 9 7 2 17 17 H 1.09004 * 109.46805 * 300.00502 * 9 7 2 18 18 H 1.08002 * 122.62113 * 0.02562 * 11 10 9 19 19 H 1.07999 * 127.24681 * 180.27022 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1940 0.0000 10 6 4.0139 -2.6147 -0.0001 11 6 4.8897 -3.0700 -0.9618 12 6 5.2550 -4.3641 -0.8276 13 16 4.4200 -4.9357 0.5640 14 7 3.6378 -3.4700 0.9051 15 1 -0.4850 0.8400 -0.0004 16 1 3.8745 -0.6807 0.8905 17 1 3.8752 -0.6794 -0.8895 18 1 5.2592 -2.4403 -1.7577 19 1 5.9292 -4.9220 -1.4604 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259766830.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:26 Heat of formation + Delta-G solvation = 10.886790 kcal Electronic energy + Delta-G solvation = -7420.271790 eV Core-core repulsion = 5835.556401 eV Total energy + Delta-G solvation = -1584.715389 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 169.026 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -39.88683 -35.06844 -32.37919 -31.24005 -26.29574 -23.25615 -20.26960 -19.15225 -18.70077 -16.69311 -15.90509 -15.07930 -14.81028 -14.34164 -13.81323 -13.56239 -12.62564 -12.43454 -12.09322 -11.89923 -11.60788 -11.13529 -10.78951 -10.54033 -9.41564 -8.29084 -6.35580 -0.05678 0.77986 1.04023 1.39097 1.43341 1.54181 1.69765 2.37242 3.05409 3.90240 4.35680 4.59638 4.85666 4.86103 4.96316 5.19717 5.51778 6.01495 6.25866 6.69532 7.26302 8.88341 Molecular weight = 169.03amu Principal moments of inertia in cm(-1) A = 0.094333 B = 0.013378 C = 0.012375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 296.750916 B = 2092.457474 C = 2262.144061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.959 3.041 4 H -0.255 1.255 5 H -0.285 1.285 6 H -0.242 1.242 7 C -0.522 4.522 8 H 0.021 0.979 9 C 0.048 3.952 10 C 0.130 3.870 11 C -0.211 4.211 12 C -0.176 4.176 13 S 0.201 5.799 14 N -0.501 5.501 15 H 0.268 0.732 16 H 0.041 0.959 17 H 0.063 0.937 18 H 0.182 0.818 19 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.370 -4.837 -3.071 14.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.194 4.194 3 Si 0.780 3.220 4 H -0.179 1.179 5 H -0.211 1.211 6 H -0.166 1.166 7 C -0.560 4.560 8 H 0.039 0.961 9 C 0.007 3.993 10 C -0.047 4.047 11 C -0.245 4.245 12 C -0.324 4.324 13 S 0.354 5.646 14 N -0.321 5.321 15 H 0.077 0.923 16 H 0.059 0.941 17 H 0.081 0.919 18 H 0.199 0.801 19 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 12.417 -5.984 -1.394 13.854 hybrid contribution 0.090 1.668 -1.158 2.033 sum 12.507 -4.315 -2.552 13.475 Atomic orbital electron populations 1.70076 1.08594 1.28420 1.52188 1.26082 0.95747 1.03798 0.93753 0.85545 0.79376 0.77223 0.79821 1.17932 1.21126 1.16567 1.21085 0.90673 0.93096 1.51172 0.96055 1.18507 0.94684 0.87124 0.99022 1.22079 0.93239 0.98416 0.90967 1.21588 1.02322 0.97488 1.03148 1.26957 1.04279 0.98316 1.02816 1.83667 1.38156 1.19787 1.23024 1.76797 1.24853 1.01912 1.28554 0.92292 0.94096 0.91902 0.80095 0.75588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.00 13.96 21.44 0.30 -60.70 13 2 C 0.00 0.17 5.47 84.65 0.46 0.63 13 3 Si 0.96 43.27 27.47 68.60 1.88 45.15 13 4 H -0.25 -10.66 7.11 99.48 0.71 -9.96 13 5 H -0.29 -12.80 7.11 99.48 0.71 -12.10 13 6 H -0.24 -10.00 6.54 99.48 0.65 -9.35 13 7 C -0.52 -31.18 9.51 25.60 0.24 -30.94 13 8 H 0.02 1.45 7.95 -2.91 -0.02 1.43 13 9 C 0.05 2.31 4.51 29.10 0.13 2.44 13 10 C 0.13 5.63 6.03 42.71 0.26 5.88 13 11 C -0.21 -6.75 9.90 21.45 0.21 -6.53 13 12 C -0.18 -4.53 11.42 67.11 0.77 -3.76 13 13 S 0.20 6.55 23.72 -56.49 -1.34 5.21 13 14 N -0.50 -22.94 11.82 -52.57 -0.62 -23.56 13 15 H 0.27 15.86 8.31 -92.71 -0.77 15.09 13 16 H 0.04 1.94 7.20 -2.39 -0.02 1.92 13 17 H 0.06 2.63 7.43 -2.38 -0.02 2.61 13 18 H 0.18 4.59 8.06 -2.91 -0.02 4.56 13 19 H 0.23 3.37 8.06 -2.91 -0.02 3.35 13 Total: -1.00 -72.09 191.57 3.49 -68.60 By element: Atomic # 1 Polarization: -3.61 SS G_CDS: 1.19 Total: -2.42 kcal Atomic # 6 Polarization: -34.36 SS G_CDS: 2.07 Total: -32.29 kcal Atomic # 7 Polarization: -83.94 SS G_CDS: -0.32 Total: -84.26 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.88 Total: 45.15 kcal Atomic # 16 Polarization: 6.55 SS G_CDS: -1.34 Total: 5.21 kcal Total: -72.09 3.49 -68.60 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259766830.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.490 kcal (2) G-P(sol) polarization free energy of solvation -72.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds