Wall clock time and date at job start Mon Mar 30 2020 02:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47252 * 2 1 4 4 H 1.08998 * 109.46966 * 306.30849 * 3 2 1 5 5 C 1.50691 * 109.47290 * 186.30355 * 3 2 1 6 6 H 1.08004 * 120.00569 * 266.64384 * 5 3 2 7 7 C 1.37882 * 120.00009 * 86.64297 * 5 3 2 8 8 N 1.31512 * 119.99901 * 353.47331 * 7 5 3 9 9 Si 1.86800 * 120.00037 * 173.46121 * 7 5 3 10 10 H 1.48500 * 109.47044 * 180.02562 * 9 7 5 11 11 H 1.48498 * 109.47537 * 300.00524 * 9 7 5 12 12 H 1.48511 * 109.46907 * 60.00618 * 9 7 5 13 13 C 1.52998 * 109.46944 * 66.30203 * 3 2 1 14 14 C 1.53778 * 113.61864 * 279.14094 * 13 3 2 15 15 C 1.53951 * 87.02267 * 220.04711 * 14 13 3 16 16 C 1.53775 * 113.61711 * 181.53206 * 13 3 2 17 17 H 1.08999 * 109.47177 * 180.02562 * 1 2 3 18 18 H 1.09006 * 109.47209 * 299.99774 * 1 2 3 19 19 H 1.08999 * 109.47331 * 59.99976 * 1 2 3 20 20 H 1.09006 * 109.47209 * 240.00226 * 2 1 3 21 21 H 1.08999 * 109.47331 * 120.00024 * 2 1 3 22 22 H 0.96999 * 120.00010 * 354.28526 * 8 7 5 23 23 H 1.09005 * 112.84954 * 50.33376 * 13 3 2 24 24 H 1.09007 * 113.61348 * 334.56927 * 14 13 3 25 25 H 1.09005 * 113.61769 * 105.46789 * 14 13 3 26 26 H 1.08997 * 113.53701 * 270.81390 * 15 14 13 27 27 H 1.09000 * 113.74739 * 139.93975 * 15 14 13 28 28 H 1.09005 * 113.61511 * 254.53310 * 16 13 3 29 29 H 1.09008 * 113.61198 * 25.42901 * 16 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5874 1.9879 -0.8281 5 6 3.5388 1.4454 -0.1560 6 1 4.1728 1.4670 0.7181 7 6 4.1010 1.4205 -1.4147 8 7 3.3364 1.2649 -2.4734 9 14 5.9486 1.6081 -1.6164 10 1 6.2977 1.5480 -3.0585 11 1 6.3773 2.9155 -1.0578 12 1 6.6394 0.5103 -0.8932 13 6 1.6634 2.1166 1.3209 14 6 0.2122 2.6237 1.3620 15 6 0.7518 3.8660 2.0938 16 6 2.0998 3.5886 1.4077 17 1 -0.3633 -1.0276 0.0005 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 1.8933 -0.5138 -0.8900 21 1 1.8933 -0.5138 0.8900 22 1 2.3894 1.0849 -2.3655 23 1 1.9442 1.5257 2.1928 24 1 -0.2020 2.8423 0.3776 25 1 -0.4483 2.0084 1.9730 26 1 0.7822 3.7538 3.1775 27 1 0.2849 4.7989 1.7778 28 1 2.9611 3.7511 2.0557 29 1 2.2028 4.0715 0.4359 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259768806.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:26 Heat of formation + Delta-G solvation = -10.083323 kcal Electronic energy + Delta-G solvation = -10028.368804 eV Core-core repulsion = 8337.083312 eV Total energy + Delta-G solvation = -1691.285492 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.40153 -34.13788 -31.55850 -27.65721 -24.81788 -23.85923 -22.70101 -19.57694 -18.59592 -16.70612 -14.97385 -14.41697 -13.67074 -13.08677 -12.73265 -12.32380 -11.89735 -11.65019 -11.12571 -10.90002 -10.76220 -10.58954 -10.30955 -10.05370 -9.84007 -9.60866 -9.33436 -8.79259 -8.31138 -8.14741 -6.24503 -3.93987 3.48097 3.49512 3.68219 4.60578 5.34648 5.42028 5.48401 5.50963 5.83764 6.07170 6.12410 6.18742 6.35720 6.38388 6.41634 6.52116 6.74905 6.78840 6.83033 6.96492 7.02315 7.26405 7.31182 7.56611 7.82266 8.38448 8.56798 8.99482 9.76810 11.13766 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.048510 B = 0.017310 C = 0.013924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.065823 B = 1617.193280 C = 2010.448758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.113 4.113 3 C 0.040 3.960 4 H 0.030 0.970 5 C -0.584 4.584 6 H 0.045 0.955 7 C 0.018 3.982 8 N -0.916 5.916 9 Si 1.061 2.939 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.290 1.290 13 C -0.086 4.086 14 C -0.140 4.140 15 C -0.151 4.151 16 C -0.118 4.118 17 H 0.031 0.969 18 H 0.053 0.947 19 H 0.043 0.957 20 H 0.050 0.950 21 H 0.039 0.961 22 H 0.270 0.730 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.818 1.791 5.986 7.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.151 4.151 3 C 0.021 3.979 4 H 0.048 0.952 5 C -0.622 4.622 6 H 0.063 0.937 7 C -0.186 4.186 8 N -0.553 5.553 9 Si 0.890 3.110 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.216 1.216 13 C -0.104 4.104 14 C -0.177 4.177 15 C -0.189 4.189 16 C -0.155 4.155 17 H 0.050 0.950 18 H 0.072 0.928 19 H 0.062 0.938 20 H 0.069 0.931 21 H 0.058 0.942 22 H 0.082 0.918 23 H 0.085 0.915 24 H 0.092 0.908 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.607 1.923 4.843 5.827 hybrid contribution -1.190 -0.213 1.196 1.701 sum -3.797 1.710 6.040 7.337 Atomic orbital electron populations 1.22036 0.98868 0.99345 1.01072 1.21713 0.92296 1.00929 1.00200 1.18896 0.96229 0.90849 0.91876 0.95160 1.21904 0.91204 1.54654 0.94440 0.93657 1.25720 1.06288 0.94132 0.92412 1.70765 1.07896 1.45291 1.31344 0.83669 0.75017 0.76420 0.75899 1.20948 1.21578 1.21637 1.22450 0.92843 0.95205 0.99923 1.23118 0.97980 0.96872 0.99713 1.22950 0.99069 0.97874 0.98992 1.22694 0.94969 0.97871 0.99985 0.94973 0.92809 0.93825 0.93077 0.94203 0.91845 0.91459 0.90821 0.92797 0.91372 0.92723 0.92818 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 9.30 37.15 0.35 -2.65 15 2 C -0.11 -2.61 5.21 -26.73 -0.14 -2.75 15 3 C 0.04 0.99 1.22 -91.77 -0.11 0.88 15 4 H 0.03 0.82 6.91 -51.93 -0.36 0.46 15 5 C -0.58 -16.28 7.83 -34.44 -0.27 -16.55 15 6 H 0.05 1.27 7.82 -52.48 -0.41 0.86 15 7 C 0.02 0.52 5.45 -17.82 -0.10 0.42 15 8 N -0.92 -27.78 13.55 55.43 0.75 -27.03 15 9 Si 1.06 25.48 29.91 -169.99 -5.08 20.40 15 10 H -0.28 -6.86 7.11 56.52 0.40 -6.45 15 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 15 12 H -0.29 -6.68 7.11 56.52 0.40 -6.28 15 13 C -0.09 -1.81 2.94 -89.81 -0.26 -2.07 15 14 C -0.14 -2.50 5.54 -25.83 -0.14 -2.64 15 15 C -0.15 -2.51 8.09 -25.83 -0.21 -2.72 15 16 C -0.12 -2.34 7.15 -25.92 -0.19 -2.53 15 17 H 0.03 0.55 8.14 -51.93 -0.42 0.13 15 18 H 0.05 0.95 5.02 -51.93 -0.26 0.69 15 19 H 0.04 0.83 8.14 -51.93 -0.42 0.41 15 20 H 0.05 1.29 7.64 -51.93 -0.40 0.89 15 21 H 0.04 0.90 8.14 -51.93 -0.42 0.47 15 22 H 0.27 8.15 6.32 -40.82 -0.26 7.89 15 23 H 0.07 1.42 8.14 -51.93 -0.42 0.99 15 24 H 0.07 1.36 7.99 -51.93 -0.41 0.94 15 25 H 0.05 0.88 7.12 -51.93 -0.37 0.51 15 26 H 0.07 1.03 8.14 -51.93 -0.42 0.60 15 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 28 H 0.05 1.04 8.14 -51.93 -0.42 0.61 15 29 H 0.08 1.66 8.10 -51.92 -0.42 1.24 15 LS Contribution 231.42 15.07 3.49 3.49 Total: -1.00 -29.07 231.42 -6.56 -35.63 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -4.64 Total: -1.88 kcal Atomic # 6 Polarization: -29.53 SS G_CDS: -1.07 Total: -30.60 kcal Atomic # 7 Polarization: -27.78 SS G_CDS: 0.75 Total: -27.03 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -5.08 Total: 20.40 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -29.07 -6.56 -35.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259768806.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.547 kcal (2) G-P(sol) polarization free energy of solvation -29.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds