Wall clock time and date at job start Mon Mar 30 2020 02:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47252 * 2 1 4 4 H 1.08998 * 109.46966 * 306.30849 * 3 2 1 5 5 C 1.50691 * 109.47290 * 186.30355 * 3 2 1 6 6 H 1.08004 * 120.00569 * 266.64384 * 5 3 2 7 7 C 1.37882 * 120.00009 * 86.64297 * 5 3 2 8 8 N 1.31512 * 119.99901 * 353.47331 * 7 5 3 9 9 Si 1.86800 * 120.00037 * 173.46121 * 7 5 3 10 10 H 1.48500 * 109.47044 * 180.02562 * 9 7 5 11 11 H 1.48498 * 109.47537 * 300.00524 * 9 7 5 12 12 H 1.48511 * 109.46907 * 60.00618 * 9 7 5 13 13 C 1.52998 * 109.46944 * 66.30203 * 3 2 1 14 14 C 1.53778 * 113.61864 * 279.14094 * 13 3 2 15 15 C 1.53951 * 87.02267 * 220.04711 * 14 13 3 16 16 C 1.53775 * 113.61711 * 181.53206 * 13 3 2 17 17 H 1.08999 * 109.47177 * 180.02562 * 1 2 3 18 18 H 1.09006 * 109.47209 * 299.99774 * 1 2 3 19 19 H 1.08999 * 109.47331 * 59.99976 * 1 2 3 20 20 H 1.09006 * 109.47209 * 240.00226 * 2 1 3 21 21 H 1.08999 * 109.47331 * 120.00024 * 2 1 3 22 22 H 0.96999 * 120.00010 * 354.28526 * 8 7 5 23 23 H 1.09005 * 112.84954 * 50.33376 * 13 3 2 24 24 H 1.09007 * 113.61348 * 334.56927 * 14 13 3 25 25 H 1.09005 * 113.61769 * 105.46789 * 14 13 3 26 26 H 1.08997 * 113.53701 * 270.81390 * 15 14 13 27 27 H 1.09000 * 113.74739 * 139.93975 * 15 14 13 28 28 H 1.09005 * 113.61511 * 254.53310 * 16 13 3 29 29 H 1.09008 * 113.61198 * 25.42901 * 16 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5874 1.9879 -0.8281 5 6 3.5388 1.4454 -0.1560 6 1 4.1728 1.4670 0.7181 7 6 4.1010 1.4205 -1.4147 8 7 3.3364 1.2649 -2.4734 9 14 5.9486 1.6081 -1.6164 10 1 6.2977 1.5480 -3.0585 11 1 6.3773 2.9155 -1.0578 12 1 6.6394 0.5103 -0.8932 13 6 1.6634 2.1166 1.3209 14 6 0.2122 2.6237 1.3620 15 6 0.7518 3.8660 2.0938 16 6 2.0998 3.5886 1.4077 17 1 -0.3633 -1.0276 0.0005 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 1.8933 -0.5138 -0.8900 21 1 1.8933 -0.5138 0.8900 22 1 2.3894 1.0849 -2.3655 23 1 1.9442 1.5257 2.1928 24 1 -0.2020 2.8423 0.3776 25 1 -0.4483 2.0084 1.9730 26 1 0.7822 3.7538 3.1775 27 1 0.2849 4.7989 1.7778 28 1 2.9611 3.7511 2.0557 29 1 2.2028 4.0715 0.4359 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259768806.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:26 Heat of formation + Delta-G solvation = -26.030578 kcal Electronic energy + Delta-G solvation = -10029.060329 eV Core-core repulsion = 8337.083312 eV Total energy + Delta-G solvation = -1691.977017 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.02266 -36.04279 -33.54108 -29.49169 -26.36533 -25.76012 -24.46441 -21.44032 -20.16092 -18.81189 -16.58035 -16.08273 -15.63302 -14.96146 -14.35433 -14.10389 -13.70309 -13.20565 -12.82661 -12.54796 -12.50941 -12.38663 -12.10983 -11.94351 -11.52870 -11.20357 -11.09505 -10.59101 -10.36243 -10.18952 -8.52600 -6.21697 1.51864 1.59373 1.78248 2.60281 3.25104 3.92878 3.94995 3.98522 4.23892 4.40599 4.51535 4.66042 4.80324 4.85432 4.97877 5.03031 5.10340 5.13705 5.18132 5.26401 5.35800 5.52269 5.62168 5.64760 5.95278 6.23068 6.34173 6.75795 7.56479 8.86068 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.048510 B = 0.017310 C = 0.013924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.065823 B = 1617.193280 C = 2010.448758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C 0.037 3.963 4 H -0.001 1.001 5 C -0.591 4.591 6 H 0.039 0.961 7 C -0.035 4.035 8 N -0.944 5.944 9 Si 1.105 2.895 10 H -0.287 1.287 11 H -0.273 1.273 12 H -0.273 1.273 13 C -0.096 4.096 14 C -0.131 4.131 15 C -0.129 4.129 16 C -0.128 4.128 17 H 0.053 0.947 18 H 0.073 0.927 19 H 0.037 0.963 20 H 0.016 0.984 21 H 0.042 0.958 22 H 0.258 0.742 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.358 2.125 7.643 9.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.147 4.147 3 C 0.018 3.982 4 H 0.017 0.983 5 C -0.630 4.630 6 H 0.057 0.943 7 C -0.233 4.233 8 N -0.582 5.582 9 Si 0.928 3.072 10 H -0.212 1.212 11 H -0.199 1.199 12 H -0.199 1.199 13 C -0.114 4.114 14 C -0.168 4.168 15 C -0.166 4.166 16 C -0.166 4.166 17 H 0.072 0.928 18 H 0.092 0.908 19 H 0.056 0.944 20 H 0.035 0.965 21 H 0.061 0.939 22 H 0.068 0.932 23 H 0.089 0.911 24 H 0.083 0.917 25 H 0.097 0.903 26 H 0.111 0.889 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.161 2.258 6.523 7.593 hybrid contribution -1.021 -0.332 0.705 1.284 sum -4.182 1.926 7.228 8.570 Atomic orbital electron populations 1.21919 0.95508 1.01069 1.01756 1.21567 0.95328 0.99234 0.98574 1.18874 0.94378 0.91916 0.93026 0.98288 1.22285 0.93181 1.53412 0.94074 0.94295 1.27074 1.09990 0.93687 0.92508 1.70880 1.07510 1.47731 1.32120 0.83090 0.70582 0.77605 0.75913 1.21246 1.19872 1.19870 1.22446 0.95908 0.95454 0.97609 1.23024 0.96054 0.97667 1.00054 1.22863 0.95765 0.98010 0.99980 1.22691 0.97419 0.97112 0.99340 0.92754 0.90786 0.94422 0.96501 0.93926 0.93152 0.91114 0.91735 0.90302 0.88876 0.90955 0.92690 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.35 9.30 71.98 0.67 -4.68 15 2 C -0.11 -5.03 5.21 30.59 0.16 -4.87 15 3 C 0.04 1.84 1.22 -11.54 -0.01 1.83 15 4 H 0.00 -0.06 6.91 -2.39 -0.02 -0.08 15 5 C -0.59 -33.51 7.83 25.60 0.20 -33.31 15 6 H 0.04 2.20 7.82 -2.91 -0.02 2.18 15 7 C -0.04 -2.06 5.45 84.66 0.46 -1.60 15 8 N -0.94 -58.93 13.55 21.45 0.29 -58.64 15 9 Si 1.11 51.59 29.91 68.60 2.05 53.64 15 10 H -0.29 -13.45 7.11 99.48 0.71 -12.74 15 11 H -0.27 -11.95 7.11 99.48 0.71 -11.24 15 12 H -0.27 -11.93 7.11 99.48 0.71 -11.22 15 13 C -0.10 -3.92 2.94 -10.27 -0.03 -3.95 15 14 C -0.13 -4.32 5.54 31.18 0.17 -4.15 15 15 C -0.13 -3.83 8.09 31.18 0.25 -3.58 15 16 C -0.13 -4.95 7.15 31.12 0.22 -4.73 15 17 H 0.05 1.75 8.14 -2.39 -0.02 1.73 15 18 H 0.07 2.41 5.02 -2.38 -0.01 2.40 15 19 H 0.04 1.41 8.14 -2.39 -0.02 1.39 15 20 H 0.02 0.85 7.64 -2.38 -0.02 0.83 15 21 H 0.04 1.90 8.14 -2.39 -0.02 1.88 15 22 H 0.26 16.25 6.32 -92.71 -0.59 15.67 15 23 H 0.07 2.84 8.14 -2.38 -0.02 2.82 15 24 H 0.06 2.26 7.99 -2.38 -0.02 2.24 15 25 H 0.08 2.23 7.12 -2.38 -0.02 2.21 15 26 H 0.09 2.36 8.14 -2.39 -0.02 2.34 15 27 H 0.07 1.93 8.14 -2.39 -0.02 1.91 15 28 H 0.05 2.06 8.14 -2.38 -0.02 2.04 15 29 H 0.05 2.23 8.10 -2.38 -0.02 2.21 15 Total: -1.00 -63.17 231.42 5.71 -57.46 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: 1.27 Total: 6.57 kcal Atomic # 6 Polarization: -61.12 SS G_CDS: 2.09 Total: -59.03 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: 0.29 Total: -58.64 kcal Atomic # 14 Polarization: 51.59 SS G_CDS: 2.05 Total: 53.64 kcal Total: -63.17 5.71 -57.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259768806.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.425 kcal (2) G-P(sol) polarization free energy of solvation -63.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds