Wall clock time and date at job start Mon Mar 30 2020 02:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30620 * 1 3 3 Si 1.86803 * 120.00228 * 2 1 4 4 H 1.48502 * 109.46756 * 239.99921 * 3 2 1 5 5 H 1.48499 * 109.47044 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47167 * 120.00028 * 3 2 1 7 7 C 1.40340 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99782 * 180.02562 * 7 2 1 9 9 C 1.39801 * 120.00203 * 0.02562 * 7 2 1 10 10 N 1.32810 * 125.79774 * 179.97438 * 9 7 2 11 11 C 1.33065 * 108.64417 * 179.76423 * 10 9 7 12 12 C 1.50705 * 126.00846 * 180.30532 * 11 10 9 13 13 O 1.42895 * 109.46973 * 180.15730 * 12 11 10 14 14 C 1.35931 * 107.98427 * 0.44028 * 11 10 9 15 15 O 1.34596 * 107.35600 * 359.56576 * 14 11 10 16 16 H 0.97002 * 119.99610 * 0.02562 * 1 2 3 17 17 H 1.09003 * 109.46814 * 300.15829 * 12 11 10 18 18 H 1.08999 * 109.47153 * 60.15235 * 12 11 10 19 19 H 0.96703 * 113.99929 * 179.97438 * 13 12 11 20 20 H 1.08002 * 126.32545 * 179.83533 * 14 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.0940 1.6963 -1.2125 5 1 1.2753 2.7465 -0.0006 6 1 3.0941 1.6964 1.2125 7 6 2.0079 -1.2154 0.0005 8 1 3.0879 -1.2154 0.0010 9 6 1.3088 -2.4261 0.0005 10 7 1.8533 -3.6375 0.0005 11 6 0.8777 -4.5424 0.0057 12 6 1.0571 -6.0387 0.0141 13 8 -0.2238 -6.6720 0.0141 14 6 -0.3092 -3.8799 -0.0009 15 8 -0.0337 -2.5624 -0.0004 16 1 -0.4850 0.8401 -0.0004 17 1 1.6129 -6.3429 -0.8729 18 1 1.6083 -6.3335 0.9070 19 1 -0.1849 -7.6382 0.0189 20 1 -1.2920 -4.3279 -0.0015 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259786226.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:36 Heat of formation + Delta-G solvation = -46.089777 kcal Electronic energy + Delta-G solvation = -9326.231192 eV Core-core repulsion = 7296.292242 eV Total energy + Delta-G solvation = -2029.938949 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 169.053 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.92468 -36.41618 -33.69900 -32.71111 -29.48042 -26.54311 -24.62232 -20.68561 -19.51769 -17.40335 -16.71450 -15.37284 -14.82070 -14.70754 -13.77697 -13.46288 -13.01521 -12.36774 -11.44701 -11.30905 -10.93717 -10.52435 -10.40272 -10.09185 -9.55492 -9.04640 -8.56517 -7.36621 -6.88592 -4.64974 2.92505 3.03665 3.07675 3.39588 3.85713 4.12301 4.60632 5.01435 5.27161 5.74353 5.98927 6.08741 6.82484 6.89440 7.04885 7.72615 7.89364 8.04001 8.20719 8.55630 8.71287 9.86000 10.14325 Molecular weight = 169.05amu Principal moments of inertia in cm(-1) A = 0.140363 B = 0.012382 C = 0.011449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 199.435339 B = 2260.804160 C = 2445.088666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.070 3.930 3 Si 0.933 3.067 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.432 4.432 8 H 0.109 0.891 9 C 0.347 3.653 10 N -0.613 5.613 11 C -0.009 4.009 12 C 0.170 3.830 13 O -0.572 6.572 14 C -0.183 4.183 15 O -0.187 6.187 16 H 0.286 0.714 17 H 0.051 0.949 18 H 0.051 0.949 19 H 0.375 0.625 20 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.494 -3.320 0.029 3.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.152 4.152 3 Si 0.756 3.244 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.468 4.468 8 H 0.127 0.873 9 C 0.162 3.838 10 N -0.348 5.348 11 C -0.132 4.132 12 C 0.092 3.908 13 O -0.376 6.376 14 C -0.257 4.257 15 O -0.079 6.079 16 H 0.097 0.903 17 H 0.069 0.931 18 H 0.069 0.931 19 H 0.221 0.779 20 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 0.732 -2.664 0.023 2.763 hybrid contribution -0.347 0.123 0.004 0.368 sum 0.385 -2.541 0.027 2.570 Atomic orbital electron populations 1.69710 1.07628 1.30063 1.33103 1.26116 0.95049 1.01960 0.92107 0.85965 0.79602 0.78633 0.80200 1.18568 1.20111 1.18562 1.18324 0.94734 0.85746 1.47989 0.87284 1.22072 0.76851 0.93184 0.91681 1.70683 1.31137 0.97957 1.35062 1.20943 0.91027 0.94379 1.06855 1.19845 0.83432 0.88126 0.99358 1.86444 1.30124 1.23194 1.97806 1.24108 0.99384 0.81964 1.20218 1.84856 1.26561 1.23873 1.72571 0.90271 0.93104 0.93093 0.77943 0.80440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -21.10 11.98 55.57 0.67 -20.44 14 2 C 0.07 1.81 5.50 -17.28 -0.10 1.72 14 3 Si 0.93 18.77 29.56 -169.99 -5.03 13.74 14 4 H -0.26 -5.14 7.11 56.52 0.40 -4.74 14 5 H -0.28 -5.35 7.11 56.52 0.40 -4.94 14 6 H -0.26 -5.14 7.11 56.52 0.40 -4.74 14 7 C -0.43 -12.20 9.45 -38.21 -0.36 -12.56 14 8 H 0.11 2.90 7.85 -52.49 -0.41 2.49 14 9 C 0.35 10.47 7.66 -16.54 -0.13 10.34 14 10 N -0.61 -17.74 11.35 -9.64 -0.11 -17.85 14 11 C -0.01 -0.23 7.08 -82.88 -0.59 -0.81 14 12 C 0.17 3.33 7.67 36.01 0.28 3.61 14 13 O -0.57 -9.80 12.96 -35.23 -0.46 -10.25 14 14 C -0.18 -4.89 11.54 29.90 0.35 -4.54 14 15 O -0.19 -5.64 9.06 3.11 0.03 -5.61 14 16 H 0.29 6.93 8.29 -40.82 -0.34 6.60 14 17 H 0.05 0.91 8.14 -51.93 -0.42 0.49 14 18 H 0.05 0.92 8.14 -51.93 -0.42 0.49 14 19 H 0.37 3.97 9.12 45.56 0.42 4.38 14 20 H 0.18 4.21 7.87 -52.49 -0.41 3.79 14 LS Contribution 194.54 15.07 2.93 2.93 Total: -1.00 -33.00 194.54 -2.90 -35.90 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -0.39 Total: 3.83 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -0.55 Total: -2.25 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.56 Total: -38.29 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.43 Total: -15.86 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 2.93 Total: 2.93 kcal Total: -33.00 -2.90 -35.90 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259786226.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.190 kcal (2) G-P(sol) polarization free energy of solvation -32.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds