Wall clock time and date at job start Mon Mar 30 2020 02:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 119.99880 * 2 1 4 4 H 1.48504 * 109.47353 * 239.99938 * 3 2 1 5 5 H 1.48505 * 109.47293 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47378 * 119.99593 * 3 2 1 7 7 C 1.37876 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99789 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00090 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.40501 * 300.17073 * 9 7 2 11 11 C 1.53374 * 109.31074 * 180.49340 * 9 7 2 12 12 C 1.53345 * 108.27540 * 191.12507 * 11 9 7 13 13 C 1.52924 * 108.80962 * 67.41013 * 12 11 9 14 14 N 1.45751 * 110.48679 * 309.16273 * 13 12 11 15 15 C 1.33358 * 124.10607 * 19.10338 * 14 13 12 16 16 O 1.21284 * 118.24116 * 177.73048 * 15 14 13 17 17 H 0.96990 * 120.00359 * 0.02562 * 1 2 3 18 18 H 1.08993 * 109.91371 * 71.33549 * 11 9 7 19 19 H 1.08998 * 109.58066 * 310.71204 * 11 9 7 20 20 H 1.09002 * 109.60400 * 307.57080 * 12 11 9 21 21 H 1.08997 * 109.60192 * 187.24937 * 12 11 9 22 22 H 1.09000 * 109.29553 * 69.47820 * 13 12 11 23 23 H 1.08998 * 109.29870 * 188.85112 * 13 12 11 24 24 H 0.96996 * 117.94572 * 199.06888 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6222 -2.5542 0.8891 11 6 2.2510 -3.6621 0.0136 12 6 1.4834 -4.9594 -0.2675 13 6 0.9687 -4.9258 -1.7071 14 7 0.2589 -3.6794 -1.9660 15 6 0.3888 -2.5773 -1.2265 16 8 -0.2219 -1.5850 -1.5630 17 1 -0.4850 0.8399 -0.0004 18 1 2.7341 -3.7253 0.9886 19 1 3.0032 -3.5058 -0.7596 20 1 0.6417 -5.0426 0.4200 21 1 2.1482 -5.8133 -0.1366 22 1 1.8117 -5.0096 -2.3930 23 1 0.2926 -5.7655 -1.8677 24 1 -0.3455 -3.6495 -2.7241 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259823713.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:22 Heat of formation + Delta-G solvation = -31.951597 kcal Electronic energy + Delta-G solvation = -10021.553607 eV Core-core repulsion = 8128.060830 eV Total energy + Delta-G solvation = -1893.492777 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 169.084 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.74270 -35.02439 -33.19154 -31.04379 -28.65295 -24.92799 -22.32039 -21.46631 -18.02169 -16.45177 -15.84694 -14.81179 -14.17602 -14.00723 -13.02354 -12.78646 -12.59461 -12.12272 -11.38392 -10.88120 -10.76321 -10.46236 -10.35651 -10.14949 -9.28407 -9.04245 -8.27720 -7.87068 -7.81820 -5.74392 -3.85038 3.42286 3.46894 3.48397 4.38892 4.50111 4.63257 5.45304 5.49793 5.52705 5.72585 6.06624 6.25960 6.28923 6.50273 6.73160 6.79039 7.05303 7.60750 8.02063 8.03318 8.29532 8.75578 9.10252 9.74850 10.02284 11.26072 Molecular weight = 169.08amu Principal moments of inertia in cm(-1) A = 0.075809 B = 0.017532 C = 0.015403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 369.258202 B = 1596.683569 C = 1817.448265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.075 3.925 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.045 3.955 10 H 0.051 0.949 11 C -0.112 4.112 12 C -0.136 4.136 13 C 0.123 3.877 14 N -0.753 5.753 15 C 0.500 3.500 16 O -0.494 6.494 17 H 0.255 0.745 18 H 0.057 0.943 19 H 0.055 0.945 20 H 0.063 0.937 21 H 0.064 0.936 22 H 0.045 0.955 23 H 0.053 0.947 24 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.282 -8.455 -1.208 8.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.134 4.134 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.586 4.586 8 H 0.076 0.924 9 C 0.024 3.976 10 H 0.069 0.931 11 C -0.150 4.150 12 C -0.174 4.174 13 C -0.002 4.002 14 N -0.411 5.411 15 C 0.288 3.712 16 O -0.364 6.364 17 H 0.065 0.935 18 H 0.076 0.924 19 H 0.074 0.926 20 H 0.082 0.918 21 H 0.083 0.917 22 H 0.064 0.936 23 H 0.072 0.928 24 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 1.907 -7.745 -1.160 8.060 hybrid contribution 0.243 0.730 -0.449 0.891 sum 2.150 -7.014 -1.608 7.511 Atomic orbital electron populations 1.70220 1.05670 1.25733 1.43679 1.24997 0.94691 0.98977 0.94726 0.86730 0.79600 0.83587 0.78355 1.20449 1.21416 1.20338 1.20626 0.92363 0.89188 1.56377 0.92367 1.18738 0.92691 0.94254 0.91940 0.93114 1.21769 0.98640 0.93712 1.00868 1.21877 1.00388 0.99206 0.95881 1.21032 0.95641 0.86790 0.96779 1.46250 1.48512 1.12835 1.33504 1.22006 0.82141 0.81087 0.85977 1.90756 1.44583 1.32435 1.68644 0.93486 0.92393 0.92593 0.91827 0.91739 0.93648 0.92820 0.79357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -25.65 10.28 55.43 0.57 -25.08 14 2 C 0.07 2.22 4.96 -17.82 -0.09 2.14 14 3 Si 0.89 22.49 29.54 -169.99 -5.02 17.47 14 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 14 5 H -0.29 -7.25 7.11 56.52 0.40 -6.84 14 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 14 7 C -0.55 -15.80 8.49 -34.44 -0.29 -16.09 14 8 H 0.06 1.63 7.74 -52.48 -0.41 1.22 14 9 C 0.04 1.16 2.39 -92.99 -0.22 0.94 14 10 H 0.05 1.40 8.14 -51.93 -0.42 0.98 14 11 C -0.11 -2.26 5.30 -26.36 -0.14 -2.40 14 12 C -0.14 -2.18 6.01 -26.59 -0.16 -2.34 14 13 C 0.12 1.95 7.17 -4.48 -0.03 1.91 14 14 N -0.75 -15.36 5.45 -61.39 -0.33 -15.70 14 15 C 0.50 13.06 7.27 -11.87 -0.09 12.98 14 16 O -0.49 -15.14 13.71 5.55 0.08 -15.06 14 17 H 0.25 7.67 8.31 -40.82 -0.34 7.33 14 18 H 0.06 1.10 8.14 -51.93 -0.42 0.67 14 19 H 0.06 1.13 8.09 -51.93 -0.42 0.71 14 20 H 0.06 1.04 8.12 -51.93 -0.42 0.61 14 21 H 0.06 0.83 8.14 -51.93 -0.42 0.41 14 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 14 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 14 24 H 0.37 7.02 8.80 -40.82 -0.36 6.66 14 LS Contribution 203.66 15.07 3.07 3.07 Total: -1.00 -33.37 203.66 -5.52 -38.89 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -2.86 Total: -0.71 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -1.02 Total: -2.87 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: 0.24 Total: -40.78 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: 0.08 Total: -15.06 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 3.07 Total: 3.07 kcal Total: -33.37 -5.52 -38.89 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259823713.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.934 kcal (2) G-P(sol) polarization free energy of solvation -33.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds