Wall clock time and date at job start Mon Mar 30 2020 02:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47099 * 2 1 4 4 C 1.53003 * 109.46681 * 119.99684 * 2 1 3 5 5 C 1.52999 * 109.47048 * 174.41932 * 4 2 1 6 6 C 1.50696 * 115.54918 * 305.28973 * 5 4 2 7 7 H 1.07997 * 120.00502 * 114.92585 * 6 5 4 8 8 C 1.37879 * 119.99796 * 294.64454 * 6 5 4 9 9 N 1.31519 * 120.00087 * 174.48394 * 8 6 5 10 10 Si 1.86799 * 120.00132 * 354.48801 * 8 6 5 11 11 H 1.48499 * 109.47223 * 91.24294 * 10 8 6 12 12 H 1.48499 * 109.47097 * 211.24261 * 10 8 6 13 13 H 1.48502 * 109.46803 * 331.23850 * 10 8 6 14 14 C 1.53000 * 117.49703 * 90.95652 * 5 4 2 15 15 C 1.52996 * 117.49936 * 159.61735 * 5 4 2 16 16 H 1.08992 * 109.47318 * 300.00625 * 1 2 3 17 17 H 1.09002 * 109.46445 * 60.00469 * 1 2 3 18 18 H 1.09003 * 109.47389 * 180.02562 * 1 2 3 19 19 H 1.08992 * 109.47318 * 239.99375 * 2 1 3 20 20 H 1.08998 * 109.47097 * 66.48189 * 3 2 1 21 21 H 1.08994 * 109.46836 * 186.48435 * 3 2 1 22 22 H 1.09001 * 109.46878 * 306.48562 * 3 2 1 23 23 H 1.09002 * 109.47435 * 54.41872 * 4 2 1 24 24 H 1.09003 * 109.46718 * 294.41880 * 4 2 1 25 25 H 0.96996 * 119.99985 * 180.02562 * 9 8 6 26 26 H 1.09004 * 117.49812 * 215.00176 * 14 5 4 27 27 H 1.08999 * 117.49937 * 0.02562 * 14 5 4 28 28 H 1.09003 * 117.49796 * 359.97438 * 15 5 4 29 29 H 1.08998 * 117.49882 * 144.97654 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5635 -0.8439 1.1813 6 6 4.1078 -1.5001 -0.0613 7 1 4.7138 -0.9315 -0.7511 8 6 3.8370 -2.8281 -0.3147 9 7 4.2189 -3.3723 -1.4494 10 14 2.9275 -3.8544 0.9538 11 1 1.4679 -3.7903 0.6881 12 1 3.3846 -5.2647 0.8694 13 1 3.2072 -3.3239 2.3124 14 6 4.3914 0.2804 1.8069 15 6 4.3121 -1.0854 2.4935 16 1 -0.3633 0.5139 0.8898 17 1 -0.3632 0.5138 -0.8901 18 1 -0.3634 -1.0277 0.0005 19 1 1.8934 -0.5139 -0.8898 20 1 1.7745 1.9217 0.9423 21 1 3.1238 1.4446 -0.1161 22 1 1.5850 1.9887 -0.8263 23 1 1.5973 -1.7160 1.3008 24 1 1.7604 -0.1528 2.1364 25 1 4.0281 -4.3064 -1.6278 26 1 5.3298 0.5454 1.3198 27 1 3.8506 1.1072 2.2674 28 1 3.7192 -1.1565 3.4055 29 1 5.1981 -1.7193 2.4582 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259848243.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:51 Heat of formation + Delta-G solvation = 0.193711 kcal Electronic energy + Delta-G solvation = -10111.402264 eV Core-core repulsion = 8420.562417 eV Total energy + Delta-G solvation = -1690.839847 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -37.57720 -34.05727 -32.04563 -26.96656 -26.51399 -25.03280 -21.38430 -19.65198 -18.73519 -16.06206 -14.88582 -14.33508 -13.60282 -13.34275 -12.80653 -12.64468 -11.94307 -11.71636 -11.30341 -11.07100 -10.67551 -10.63447 -10.43994 -9.98785 -9.88765 -9.75804 -9.18448 -8.86955 -8.49071 -8.22936 -6.04666 -4.03744 3.33311 3.43160 3.51982 4.49545 4.99814 5.33539 5.63298 5.71989 5.76441 6.05601 6.15561 6.19932 6.32319 6.38155 6.46835 6.50878 6.60624 6.61525 6.75198 6.90218 6.90719 7.12073 7.24938 7.29241 7.47393 7.86297 8.58937 8.98582 9.60138 11.07273 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.039163 B = 0.022631 C = 0.019334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.788180 B = 1236.926810 C = 1447.864300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 C -0.136 4.136 4 C -0.077 4.077 5 C 0.006 3.994 6 C -0.477 4.477 7 H 0.074 0.926 8 C 0.078 3.922 9 N -0.901 5.901 10 Si 0.870 3.130 11 H -0.279 1.279 12 H -0.296 1.296 13 H -0.251 1.251 14 C -0.184 4.184 15 C -0.202 4.202 16 H 0.043 0.957 17 H 0.046 0.954 18 H 0.047 0.953 19 H 0.089 0.911 20 H 0.038 0.962 21 H 0.064 0.936 22 H 0.038 0.962 23 H 0.048 0.952 24 H 0.037 0.963 25 H 0.263 0.737 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.048 5.143 4.859 8.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 C -0.193 4.193 4 C -0.115 4.115 5 C 0.005 3.995 6 C -0.515 4.515 7 H 0.092 0.908 8 C -0.124 4.124 9 N -0.539 5.539 10 Si 0.698 3.302 11 H -0.206 1.206 12 H -0.223 1.223 13 H -0.175 1.175 14 C -0.221 4.221 15 C -0.239 4.239 16 H 0.062 0.938 17 H 0.066 0.934 18 H 0.066 0.934 19 H 0.108 0.892 20 H 0.057 0.943 21 H 0.083 0.917 22 H 0.057 0.943 23 H 0.066 0.934 24 H 0.056 0.944 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.041 4.975 4.750 8.528 hybrid contribution -0.449 -0.716 0.667 1.077 sum -5.489 4.259 5.417 8.810 Atomic orbital electron populations 1.21892 0.97278 1.00831 1.00376 1.20975 0.93024 0.96123 1.00487 1.21764 1.02093 0.95992 0.99438 1.21296 0.95941 0.98412 0.95842 1.19453 0.89746 0.97730 0.92559 1.20293 1.31937 0.95199 1.04031 0.90770 1.24901 0.95008 0.97692 0.94792 1.69912 1.47447 1.13382 1.23125 0.86972 0.79913 0.79005 0.84264 1.20581 1.22323 1.17458 1.22787 1.02406 0.91195 1.05755 1.23049 1.03967 0.99500 0.97424 0.93774 0.93449 0.93374 0.89224 0.94259 0.91703 0.94257 0.93363 0.94419 0.92727 0.90194 0.91216 0.91706 0.90000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.19 37.16 0.34 -2.11 15 2 C -0.09 -1.74 2.77 -90.62 -0.25 -1.99 15 3 C -0.14 -2.39 8.58 37.16 0.32 -2.07 15 4 C -0.08 -1.65 4.25 -26.73 -0.11 -1.76 15 5 C 0.01 0.14 0.42 -155.66 -0.07 0.07 15 6 C -0.48 -13.20 8.22 -34.44 -0.28 -13.48 15 7 H 0.07 2.24 8.06 -52.49 -0.42 1.82 15 8 C 0.08 2.23 5.47 -17.82 -0.10 2.13 15 9 N -0.90 -27.39 13.96 55.43 0.77 -26.62 15 10 Si 0.87 21.77 24.97 -169.99 -4.24 17.53 15 11 H -0.28 -6.86 7.00 56.52 0.40 -6.47 15 12 H -0.30 -7.48 7.11 56.52 0.40 -7.08 15 13 H -0.25 -5.99 5.77 56.52 0.33 -5.66 15 14 C -0.18 -3.82 8.47 -26.69 -0.23 -4.04 15 15 C -0.20 -4.42 8.09 -26.69 -0.22 -4.63 15 16 H 0.04 0.66 8.14 -51.93 -0.42 0.24 15 17 H 0.05 0.71 8.14 -51.93 -0.42 0.29 15 18 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 19 H 0.09 2.06 7.22 -51.93 -0.37 1.68 15 20 H 0.04 0.63 8.14 -51.93 -0.42 0.21 15 21 H 0.06 1.24 6.73 -51.93 -0.35 0.89 15 22 H 0.04 0.62 8.14 -51.93 -0.42 0.20 15 23 H 0.05 1.08 5.06 -51.93 -0.26 0.82 15 24 H 0.04 0.73 8.09 -51.93 -0.42 0.31 15 25 H 0.26 7.56 8.31 -40.82 -0.34 7.22 15 26 H 0.08 1.67 8.14 -51.93 -0.42 1.24 15 27 H 0.07 1.29 8.14 -51.93 -0.42 0.87 15 28 H 0.06 1.31 8.14 -51.93 -0.42 0.89 15 29 H 0.08 1.85 8.14 -51.93 -0.42 1.43 15 LS Contribution 231.00 15.07 3.48 3.48 Total: -1.00 -28.78 231.00 -5.43 -34.21 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -4.85 Total: -0.72 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: -0.59 Total: -27.89 kcal Atomic # 7 Polarization: -27.39 SS G_CDS: 0.77 Total: -26.62 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.24 Total: 17.53 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -28.78 -5.43 -34.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259848243.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.408 kcal (2) G-P(sol) polarization free energy of solvation -28.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds