Wall clock time and date at job start Mon Mar 30 2020 02:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47099 * 2 1 4 4 C 1.53003 * 109.46681 * 119.99684 * 2 1 3 5 5 C 1.52999 * 109.47048 * 174.41932 * 4 2 1 6 6 C 1.50696 * 115.54918 * 305.28973 * 5 4 2 7 7 H 1.07997 * 120.00502 * 114.92585 * 6 5 4 8 8 C 1.37879 * 119.99796 * 294.64454 * 6 5 4 9 9 N 1.31519 * 120.00087 * 174.48394 * 8 6 5 10 10 Si 1.86799 * 120.00132 * 354.48801 * 8 6 5 11 11 H 1.48499 * 109.47223 * 91.24294 * 10 8 6 12 12 H 1.48499 * 109.47097 * 211.24261 * 10 8 6 13 13 H 1.48502 * 109.46803 * 331.23850 * 10 8 6 14 14 C 1.53000 * 117.49703 * 90.95652 * 5 4 2 15 15 C 1.52996 * 117.49936 * 159.61735 * 5 4 2 16 16 H 1.08992 * 109.47318 * 300.00625 * 1 2 3 17 17 H 1.09002 * 109.46445 * 60.00469 * 1 2 3 18 18 H 1.09003 * 109.47389 * 180.02562 * 1 2 3 19 19 H 1.08992 * 109.47318 * 239.99375 * 2 1 3 20 20 H 1.08998 * 109.47097 * 66.48189 * 3 2 1 21 21 H 1.08994 * 109.46836 * 186.48435 * 3 2 1 22 22 H 1.09001 * 109.46878 * 306.48562 * 3 2 1 23 23 H 1.09002 * 109.47435 * 54.41872 * 4 2 1 24 24 H 1.09003 * 109.46718 * 294.41880 * 4 2 1 25 25 H 0.96996 * 119.99985 * 180.02562 * 9 8 6 26 26 H 1.09004 * 117.49812 * 215.00176 * 14 5 4 27 27 H 1.08999 * 117.49937 * 0.02562 * 14 5 4 28 28 H 1.09003 * 117.49796 * 359.97438 * 15 5 4 29 29 H 1.08998 * 117.49882 * 144.97654 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5635 -0.8439 1.1813 6 6 4.1078 -1.5001 -0.0613 7 1 4.7138 -0.9315 -0.7511 8 6 3.8370 -2.8281 -0.3147 9 7 4.2189 -3.3723 -1.4494 10 14 2.9275 -3.8544 0.9538 11 1 1.4679 -3.7903 0.6881 12 1 3.3846 -5.2647 0.8694 13 1 3.2072 -3.3239 2.3124 14 6 4.3914 0.2804 1.8069 15 6 4.3121 -1.0854 2.4935 16 1 -0.3633 0.5139 0.8898 17 1 -0.3632 0.5138 -0.8901 18 1 -0.3634 -1.0277 0.0005 19 1 1.8934 -0.5139 -0.8898 20 1 1.7745 1.9217 0.9423 21 1 3.1238 1.4446 -0.1161 22 1 1.5850 1.9887 -0.8263 23 1 1.5973 -1.7160 1.3008 24 1 1.7604 -0.1528 2.1364 25 1 4.0281 -4.3064 -1.6278 26 1 5.3298 0.5454 1.3198 27 1 3.8506 1.1072 2.2674 28 1 3.7192 -1.1565 3.4055 29 1 5.1981 -1.7193 2.4582 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259848243.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:51 Heat of formation + Delta-G solvation = -16.926366 kcal Electronic energy + Delta-G solvation = -10112.144646 eV Core-core repulsion = 8420.562417 eV Total energy + Delta-G solvation = -1691.582229 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.29830 -35.62324 -34.21677 -28.70875 -27.86949 -27.03154 -23.08830 -21.25353 -20.61500 -18.08190 -16.81462 -15.94311 -15.35920 -14.89840 -14.81197 -14.24824 -13.64294 -13.13695 -12.97441 -12.86967 -12.34988 -12.33544 -12.10205 -11.71470 -11.57659 -11.42534 -11.03147 -10.84069 -10.42012 -10.06011 -8.25711 -6.27698 1.34380 1.39459 1.53427 2.40427 3.04711 3.39334 4.07610 4.23823 4.27059 4.47491 4.51505 4.67823 4.85954 4.92599 4.95122 4.98199 5.08124 5.11781 5.19951 5.25883 5.32093 5.56621 5.63250 5.66758 5.79937 5.86575 6.37036 6.78628 7.38940 8.90266 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.039163 B = 0.022631 C = 0.019334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.788180 B = 1236.926810 C = 1447.864300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.091 4.091 3 C -0.130 4.130 4 C -0.075 4.075 5 C -0.021 4.021 6 C -0.471 4.471 7 H 0.027 0.973 8 C 0.021 3.979 9 N -0.953 5.953 10 Si 0.929 3.071 11 H -0.271 1.271 12 H -0.302 1.302 13 H -0.227 1.227 14 C -0.164 4.164 15 C -0.198 4.198 16 H 0.069 0.931 17 H 0.060 0.940 18 H 0.039 0.961 19 H 0.042 0.958 20 H 0.064 0.936 21 H 0.041 0.959 22 H 0.054 0.946 23 H 0.035 0.965 24 H 0.069 0.931 25 H 0.263 0.737 26 H 0.069 0.931 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.683 6.284 7.246 11.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 C -0.187 4.187 4 C -0.113 4.113 5 C -0.022 4.022 6 C -0.509 4.509 7 H 0.045 0.955 8 C -0.176 4.176 9 N -0.593 5.593 10 Si 0.754 3.246 11 H -0.197 1.197 12 H -0.229 1.229 13 H -0.150 1.150 14 C -0.201 4.201 15 C -0.236 4.236 16 H 0.088 0.912 17 H 0.079 0.921 18 H 0.059 0.941 19 H 0.060 0.940 20 H 0.083 0.917 21 H 0.060 0.940 22 H 0.073 0.927 23 H 0.053 0.947 24 H 0.088 0.912 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.121 0.879 28 H 0.111 0.889 29 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.676 6.141 7.154 11.552 hybrid contribution 0.136 -0.985 -0.147 1.005 sum -6.540 5.156 7.007 10.883 Atomic orbital electron populations 1.21828 0.94601 1.01017 1.02343 1.20936 0.95336 0.96799 0.97912 1.21696 1.00626 0.94898 1.01487 1.21279 0.93807 0.98461 0.97717 1.19403 0.91498 0.99958 0.91342 1.20454 1.30505 0.94957 1.04977 0.95491 1.25703 0.96239 0.99051 0.96567 1.70061 1.50003 1.13745 1.25520 0.86034 0.78893 0.76847 0.82777 1.19696 1.22944 1.14953 1.22820 1.01557 0.91542 1.04171 1.23077 1.03259 0.99916 0.97309 0.91248 0.92057 0.94133 0.93960 0.91722 0.93963 0.92704 0.94658 0.91236 0.92844 0.91227 0.87873 0.88922 0.91438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.27 9.19 71.98 0.66 -3.61 15 2 C -0.09 -3.45 2.77 -10.79 -0.03 -3.48 15 3 C -0.13 -4.25 8.58 71.98 0.62 -3.63 15 4 C -0.08 -2.99 4.25 30.59 0.13 -2.86 15 5 C -0.02 -0.96 0.42 -52.93 -0.02 -0.98 15 6 C -0.47 -26.76 8.22 25.60 0.21 -26.55 15 7 H 0.03 1.73 8.06 -2.91 -0.02 1.70 15 8 C 0.02 1.24 5.47 84.65 0.46 1.70 15 9 N -0.95 -60.33 13.96 21.45 0.30 -60.03 15 10 Si 0.93 44.90 24.97 68.60 1.71 46.61 15 11 H -0.27 -12.64 7.00 99.48 0.70 -11.95 15 12 H -0.30 -14.76 7.11 99.48 0.71 -14.05 15 13 H -0.23 -9.98 5.77 99.48 0.57 -9.40 15 14 C -0.16 -6.36 8.47 30.62 0.26 -6.10 15 15 C -0.20 -8.08 8.09 30.62 0.25 -7.83 15 16 H 0.07 1.77 8.14 -2.39 -0.02 1.75 15 17 H 0.06 1.67 8.14 -2.39 -0.02 1.65 15 18 H 0.04 1.27 8.14 -2.39 -0.02 1.25 15 19 H 0.04 1.98 7.22 -2.39 -0.02 1.96 15 20 H 0.06 1.78 8.14 -2.39 -0.02 1.76 15 21 H 0.04 1.55 6.73 -2.39 -0.02 1.53 15 22 H 0.05 1.59 8.14 -2.39 -0.02 1.57 15 23 H 0.03 1.48 5.06 -2.39 -0.01 1.47 15 24 H 0.07 2.33 8.09 -2.39 -0.02 2.31 15 25 H 0.26 15.70 8.31 -92.71 -0.77 14.93 15 26 H 0.07 2.82 8.14 -2.38 -0.02 2.80 15 27 H 0.10 3.33 8.14 -2.39 -0.02 3.31 15 28 H 0.09 3.29 8.14 -2.39 -0.02 3.27 15 29 H 0.07 2.93 8.14 -2.39 -0.02 2.91 15 Total: -1.00 -63.46 231.00 5.49 -57.97 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 0.94 Total: 8.78 kcal Atomic # 6 Polarization: -55.88 SS G_CDS: 2.54 Total: -53.34 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: 0.30 Total: -60.03 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.71 Total: 46.61 kcal Total: -63.46 5.49 -57.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259848243.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.045 kcal (2) G-P(sol) polarization free energy of solvation -63.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds