Wall clock time and date at job start Mon Mar 30 2020 02:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46989 * 2 1 4 4 C 1.53005 * 109.46733 * 240.00699 * 2 1 3 5 5 C 1.52999 * 109.47159 * 299.99162 * 4 2 1 6 6 C 1.52997 * 109.47317 * 300.00546 * 5 4 2 7 7 C 1.53000 * 109.47060 * 59.99960 * 6 5 4 8 8 H 1.08992 * 109.47399 * 59.99823 * 7 6 5 9 9 C 1.50706 * 109.46735 * 180.02562 * 7 6 5 10 10 H 1.07997 * 119.99905 * 120.00285 * 9 7 6 11 11 C 1.37873 * 119.99690 * 299.99566 * 9 7 6 12 12 N 1.31515 * 120.00416 * 0.02562 * 11 9 7 13 13 Si 1.86803 * 119.99975 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.46988 * 59.99652 * 13 11 9 15 15 H 1.48494 * 109.47452 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47065 * 300.00218 * 13 11 9 17 17 C 1.52997 * 109.47457 * 120.00329 * 2 1 3 18 18 H 1.09004 * 109.46976 * 299.99386 * 1 2 3 19 19 H 1.09000 * 109.47380 * 59.99511 * 1 2 3 20 20 H 1.09001 * 109.46989 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47360 * 59.99776 * 4 2 1 22 22 H 1.09002 * 109.46935 * 179.97438 * 4 2 1 23 23 H 1.08996 * 109.46929 * 179.97438 * 5 4 2 24 24 H 1.09002 * 109.46716 * 60.00455 * 5 4 2 25 25 H 1.09002 * 109.47153 * 299.99641 * 6 5 4 26 26 H 1.09001 * 109.46832 * 179.97438 * 6 5 4 27 27 H 0.97001 * 120.00306 * 180.02562 * 12 11 9 28 28 H 1.08993 * 109.47194 * 299.99651 * 17 2 1 29 29 H 1.09002 * 109.46695 * 179.97438 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 1.5300 -2.1637 -1.2494 6 6 2.0401 -2.8850 -0.0003 7 6 1.5301 -2.1638 1.2490 8 1 0.4402 -2.1638 1.2491 9 6 2.0331 -2.8740 2.4794 10 1 2.6539 -2.3488 3.1901 11 6 1.7005 -4.1941 2.6977 12 7 0.9448 -4.8337 1.8320 13 14 2.3233 -5.0742 4.2231 14 1 1.8279 -4.3742 5.4355 15 1 1.8285 -6.4743 4.2236 16 1 3.8083 -5.0736 4.2233 17 6 2.0400 -0.7213 1.2492 18 1 -0.3633 0.5138 0.8901 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 1.6765 -0.2072 -2.1393 22 1 3.1299 -0.7208 -1.2497 23 1 1.8929 -2.6772 -2.1397 24 1 0.4400 -2.1637 -1.2494 25 1 3.1301 -2.8849 -0.0004 26 1 1.6764 -3.9125 -0.0002 27 1 0.7105 -5.7624 1.9858 28 1 1.6768 -0.2075 2.1391 29 1 3.1301 -0.7216 1.2488 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259859854.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:12 Heat of formation + Delta-G solvation = -36.379578 kcal Electronic energy + Delta-G solvation = -10128.465432 eV Core-core repulsion = 8436.039648 eV Total energy + Delta-G solvation = -1692.425784 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.03309 -33.03185 -30.52849 -29.67277 -25.90909 -24.69795 -21.12547 -20.56195 -17.52056 -16.38672 -14.73252 -14.13089 -13.69913 -13.14874 -12.86969 -12.20162 -11.90757 -11.54868 -11.12923 -10.88347 -10.74336 -10.48167 -10.18432 -10.01540 -9.93713 -9.70102 -9.12765 -8.72576 -8.48880 -8.16607 -5.90161 -3.96020 3.35798 3.40230 3.43083 4.49709 5.38203 5.57126 5.58904 5.66116 6.13140 6.19185 6.28005 6.36773 6.55564 6.62654 6.65734 6.72800 6.83162 6.93558 6.95889 7.10770 7.29535 7.39972 7.65743 7.84129 8.14851 8.26502 8.57509 9.08364 9.67848 11.15083 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.074759 B = 0.014763 C = 0.013848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.448257 B = 1896.210750 C = 2021.522320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 H 0.048 0.952 4 C -0.108 4.108 5 C -0.121 4.121 6 C -0.110 4.110 7 C 0.048 3.952 8 H 0.029 0.971 9 C -0.512 4.512 10 H 0.052 0.948 11 C 0.060 3.940 12 N -0.892 5.892 13 Si 0.888 3.112 14 H -0.278 1.278 15 H -0.288 1.288 16 H -0.278 1.278 17 C -0.104 4.104 18 H 0.045 0.955 19 H 0.038 0.962 20 H 0.069 0.931 21 H 0.042 0.958 22 H 0.051 0.949 23 H 0.038 0.962 24 H 0.054 0.946 25 H 0.030 0.970 26 H 0.088 0.912 27 H 0.259 0.741 28 H 0.043 0.957 29 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.474 5.535 -3.780 6.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.067 0.933 4 C -0.146 4.146 5 C -0.158 4.158 6 C -0.148 4.148 7 C 0.030 3.970 8 H 0.047 0.953 9 C -0.551 4.551 10 H 0.070 0.930 11 C -0.140 4.140 12 N -0.531 5.531 13 Si 0.716 3.284 14 H -0.204 1.204 15 H -0.214 1.214 16 H -0.204 1.204 17 C -0.142 4.142 18 H 0.065 0.935 19 H 0.057 0.943 20 H 0.088 0.912 21 H 0.061 0.939 22 H 0.070 0.930 23 H 0.057 0.943 24 H 0.073 0.927 25 H 0.049 0.951 26 H 0.107 0.893 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.390 5.353 -3.807 6.580 hybrid contribution 0.380 -0.535 0.823 1.053 sum 0.770 4.818 -2.984 5.719 Atomic orbital electron populations 1.21905 0.96057 1.02590 0.99768 1.21109 0.95573 0.97702 0.96559 0.93326 1.21518 0.99762 0.96822 0.96448 1.21663 1.00296 0.94745 0.99121 1.21603 0.98079 1.02173 0.92922 1.18674 0.96284 0.88862 0.93187 0.95292 1.21250 1.31210 0.96199 1.06404 0.93006 1.24963 0.95180 0.97567 0.96333 1.69873 1.37120 1.10779 1.35318 0.86728 0.79168 0.78665 0.83828 1.20398 1.21372 1.20402 1.21653 0.99232 0.98732 0.94540 0.93547 0.94272 0.91212 0.93909 0.92984 0.94333 0.92737 0.95120 0.89320 0.93128 0.93792 0.93687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 8.50 37.16 0.32 -2.24 15 2 C -0.09 -1.67 3.19 -90.62 -0.29 -1.96 15 3 H 0.05 0.81 8.14 -51.93 -0.42 0.38 15 4 C -0.11 -1.93 5.45 -26.73 -0.15 -2.07 15 5 C -0.12 -2.42 5.65 -26.73 -0.15 -2.57 15 6 C -0.11 -2.66 4.98 -26.73 -0.13 -2.79 15 7 C 0.05 1.22 1.83 -91.77 -0.17 1.05 15 8 H 0.03 0.79 6.43 -51.93 -0.33 0.46 15 9 C -0.51 -14.41 8.56 -34.44 -0.29 -14.70 15 10 H 0.05 1.44 7.74 -52.49 -0.41 1.04 15 11 C 0.06 1.70 5.30 -17.82 -0.09 1.60 15 12 N -0.89 -25.88 11.32 55.43 0.63 -25.25 15 13 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 15 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 15 H -0.29 -6.96 7.11 56.52 0.40 -6.55 15 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 17 C -0.10 -2.25 4.67 -26.73 -0.12 -2.38 15 18 H 0.05 0.77 8.14 -51.93 -0.42 0.35 15 19 H 0.04 0.59 8.14 -51.93 -0.42 0.17 15 20 H 0.07 1.36 4.81 -51.93 -0.25 1.11 15 21 H 0.04 0.67 8.14 -51.93 -0.42 0.25 15 22 H 0.05 0.91 8.14 -51.93 -0.42 0.49 15 23 H 0.04 0.71 8.14 -51.93 -0.42 0.29 15 24 H 0.05 1.10 6.43 -51.93 -0.33 0.76 15 25 H 0.03 0.74 8.14 -51.93 -0.42 0.32 15 26 H 0.09 2.40 6.07 -51.93 -0.32 2.09 15 27 H 0.26 7.19 8.31 -40.82 -0.34 6.85 15 28 H 0.04 0.94 8.14 -51.93 -0.42 0.52 15 29 H 0.04 0.97 8.14 -51.93 -0.42 0.55 15 LS Contribution 223.37 15.07 3.37 3.37 Total: -1.00 -28.19 223.37 -6.69 -34.88 By element: Atomic # 1 Polarization: 1.01 SS G_CDS: -4.58 Total: -3.57 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: -1.09 Total: -26.06 kcal Atomic # 7 Polarization: -25.88 SS G_CDS: 0.63 Total: -25.25 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -28.19 -6.69 -34.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259859854.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.496 kcal (2) G-P(sol) polarization free energy of solvation -28.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds