Wall clock time and date at job start Mon Mar 30 2020 02:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46989 * 2 1 4 4 C 1.53005 * 109.46733 * 240.00699 * 2 1 3 5 5 C 1.52999 * 109.47159 * 299.99162 * 4 2 1 6 6 C 1.52997 * 109.47317 * 300.00546 * 5 4 2 7 7 C 1.53000 * 109.47060 * 59.99960 * 6 5 4 8 8 H 1.08992 * 109.47399 * 59.99823 * 7 6 5 9 9 C 1.50706 * 109.46735 * 180.02562 * 7 6 5 10 10 H 1.07997 * 119.99905 * 120.00285 * 9 7 6 11 11 C 1.37873 * 119.99690 * 299.99566 * 9 7 6 12 12 N 1.31515 * 120.00416 * 0.02562 * 11 9 7 13 13 Si 1.86803 * 119.99975 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.46988 * 59.99652 * 13 11 9 15 15 H 1.48494 * 109.47452 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47065 * 300.00218 * 13 11 9 17 17 C 1.52997 * 109.47457 * 120.00329 * 2 1 3 18 18 H 1.09004 * 109.46976 * 299.99386 * 1 2 3 19 19 H 1.09000 * 109.47380 * 59.99511 * 1 2 3 20 20 H 1.09001 * 109.46989 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47360 * 59.99776 * 4 2 1 22 22 H 1.09002 * 109.46935 * 179.97438 * 4 2 1 23 23 H 1.08996 * 109.46929 * 179.97438 * 5 4 2 24 24 H 1.09002 * 109.46716 * 60.00455 * 5 4 2 25 25 H 1.09002 * 109.47153 * 299.99641 * 6 5 4 26 26 H 1.09001 * 109.46832 * 179.97438 * 6 5 4 27 27 H 0.97001 * 120.00306 * 180.02562 * 12 11 9 28 28 H 1.08993 * 109.47194 * 299.99651 * 17 2 1 29 29 H 1.09002 * 109.46695 * 179.97438 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 1.5300 -2.1637 -1.2494 6 6 2.0401 -2.8850 -0.0003 7 6 1.5301 -2.1638 1.2490 8 1 0.4402 -2.1638 1.2491 9 6 2.0331 -2.8740 2.4794 10 1 2.6539 -2.3488 3.1901 11 6 1.7005 -4.1941 2.6977 12 7 0.9448 -4.8337 1.8320 13 14 2.3233 -5.0742 4.2231 14 1 1.8279 -4.3742 5.4355 15 1 1.8285 -6.4743 4.2236 16 1 3.8083 -5.0736 4.2233 17 6 2.0400 -0.7213 1.2492 18 1 -0.3633 0.5138 0.8901 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 1.6765 -0.2072 -2.1393 22 1 3.1299 -0.7208 -1.2497 23 1 1.8929 -2.6772 -2.1397 24 1 0.4400 -2.1637 -1.2494 25 1 3.1301 -2.8849 -0.0004 26 1 1.6764 -3.9125 -0.0002 27 1 0.7105 -5.7624 1.9858 28 1 1.6768 -0.2075 2.1391 29 1 3.1301 -0.7216 1.2488 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259859854.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:12 Heat of formation + Delta-G solvation = -51.688388 kcal Electronic energy + Delta-G solvation = -10129.129271 eV Core-core repulsion = 8436.039648 eV Total energy + Delta-G solvation = -1693.089623 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.70309 -35.05433 -32.21257 -31.54486 -27.41653 -26.75232 -22.82143 -22.39165 -19.16569 -18.46473 -16.70369 -15.87700 -15.25227 -14.93005 -14.45538 -14.12252 -13.59031 -13.20224 -12.92948 -12.79435 -12.55315 -12.21756 -11.80274 -11.71770 -11.62579 -11.56356 -10.96466 -10.60367 -10.36755 -10.21512 -8.05115 -6.19268 1.40278 1.41542 1.49234 2.44164 3.20111 4.06449 4.11009 4.18631 4.61528 4.69245 4.75648 4.86915 4.94423 4.97274 5.12728 5.17944 5.22549 5.27065 5.35611 5.51837 5.55077 5.63936 5.66742 5.81040 6.12663 6.26441 6.46132 6.94611 7.48112 8.98010 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.074759 B = 0.014763 C = 0.013848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.448257 B = 1896.210750 C = 2021.522320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 H 0.078 0.922 4 C -0.103 4.103 5 C -0.116 4.116 6 C -0.105 4.105 7 C 0.045 3.955 8 H 0.002 0.998 9 C -0.538 4.538 10 H 0.047 0.953 11 C 0.011 3.989 12 N -0.917 5.917 13 Si 0.950 3.050 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.272 1.272 17 C -0.100 4.100 18 H 0.048 0.952 19 H 0.068 0.932 20 H 0.041 0.959 21 H 0.076 0.924 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.020 0.980 26 H 0.053 0.947 27 H 0.259 0.741 28 H 0.039 0.961 29 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.878 6.691 -4.281 7.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 H 0.096 0.904 4 C -0.141 4.141 5 C -0.153 4.153 6 C -0.143 4.143 7 C 0.027 3.973 8 H 0.020 0.980 9 C -0.576 4.576 10 H 0.065 0.935 11 C -0.187 4.187 12 N -0.557 5.557 13 Si 0.776 3.224 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.198 1.198 17 C -0.138 4.138 18 H 0.067 0.933 19 H 0.087 0.913 20 H 0.060 0.940 21 H 0.094 0.906 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.039 0.961 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.797 6.519 -4.308 7.854 hybrid contribution 0.240 -0.904 0.989 1.361 sum 1.037 5.615 -3.320 6.605 Atomic orbital electron populations 1.21860 0.95530 1.01264 1.01390 1.21121 0.96014 0.98753 0.94821 0.90381 1.21501 1.00053 0.95008 0.97521 1.21579 1.00044 0.96355 0.97342 1.21430 0.97224 1.00751 0.94872 1.18644 0.94608 0.91301 0.92782 0.97971 1.21679 1.31415 0.96939 1.07616 0.93487 1.25738 0.95398 0.98361 0.99244 1.70020 1.37921 1.10921 1.36806 0.85733 0.78777 0.77552 0.80324 1.19743 1.20851 1.19773 1.21559 0.98922 0.96668 0.96615 0.93293 0.91329 0.93978 0.90569 0.92550 0.92719 0.93115 0.96083 0.92828 0.93174 0.94181 0.94001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.70 8.50 71.98 0.61 -4.09 15 2 C -0.09 -3.01 3.19 -10.79 -0.03 -3.04 15 3 H 0.08 2.26 8.14 -2.39 -0.02 2.24 15 4 C -0.10 -3.36 5.45 30.60 0.17 -3.19 15 5 C -0.12 -4.49 5.65 30.59 0.17 -4.32 15 6 C -0.10 -5.13 4.98 30.59 0.15 -4.98 15 7 C 0.04 2.32 1.83 -11.54 -0.02 2.29 15 8 H 0.00 0.13 6.43 -2.39 -0.02 0.11 15 9 C -0.54 -30.84 8.56 25.60 0.22 -30.62 15 10 H 0.05 2.65 7.74 -2.91 -0.02 2.63 15 11 C 0.01 0.62 5.30 84.65 0.45 1.06 15 12 N -0.92 -54.46 11.32 21.45 0.24 -54.21 15 13 Si 0.95 44.79 29.54 68.60 2.03 46.82 15 14 H -0.27 -12.48 7.11 99.48 0.71 -11.77 15 15 H -0.28 -13.02 7.11 99.48 0.71 -12.32 15 16 H -0.27 -12.50 7.11 99.48 0.71 -11.79 15 17 C -0.10 -4.25 4.67 30.59 0.14 -4.11 15 18 H 0.05 1.55 8.14 -2.38 -0.02 1.53 15 19 H 0.07 1.83 8.14 -2.39 -0.02 1.81 15 20 H 0.04 1.61 4.81 -2.39 -0.01 1.59 15 21 H 0.08 2.03 8.14 -2.39 -0.02 2.01 15 22 H 0.06 1.79 8.14 -2.39 -0.02 1.77 15 23 H 0.05 1.92 8.14 -2.39 -0.02 1.90 15 24 H 0.05 2.00 6.43 -2.39 -0.02 1.98 15 25 H 0.02 1.02 8.14 -2.39 -0.02 1.00 15 26 H 0.05 2.99 6.07 -2.39 -0.01 2.97 15 27 H 0.26 14.67 8.31 -92.71 -0.77 13.90 15 28 H 0.04 1.69 8.14 -2.39 -0.02 1.67 15 29 H 0.04 1.77 8.14 -2.39 -0.02 1.75 15 Total: -1.00 -60.61 223.37 5.22 -55.39 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: 1.10 Total: 2.99 kcal Atomic # 6 Polarization: -52.85 SS G_CDS: 1.86 Total: -50.99 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: 0.24 Total: -54.21 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -60.61 5.22 -55.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259859854.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.700 kcal (2) G-P(sol) polarization free energy of solvation -60.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds