Wall clock time and date at job start Mon Mar 30 2020 02:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08993 * 109.47510 * 2 1 4 4 C 1.53001 * 109.46839 * 120.00069 * 2 1 3 5 5 C 1.52998 * 109.47416 * 59.99661 * 4 2 1 6 6 C 1.53002 * 109.46890 * 60.00204 * 5 4 2 7 7 C 1.52995 * 109.47281 * 299.99787 * 6 5 4 8 8 H 1.09000 * 109.46936 * 300.00527 * 7 6 5 9 9 C 1.50699 * 109.47425 * 180.02562 * 7 6 5 10 10 H 1.07994 * 120.00061 * 275.14845 * 9 7 6 11 11 C 1.37874 * 119.99855 * 95.14521 * 9 7 6 12 12 N 1.31512 * 119.99904 * 186.01457 * 11 9 7 13 13 Si 1.86797 * 120.00211 * 6.01540 * 11 9 7 14 14 H 1.48507 * 109.47084 * 84.77320 * 13 11 9 15 15 H 1.48499 * 109.47203 * 204.77153 * 13 11 9 16 16 H 1.48499 * 109.47397 * 324.77573 * 13 11 9 17 17 C 1.53000 * 109.47364 * 239.99367 * 2 1 3 18 18 H 1.09004 * 109.47211 * 300.00503 * 1 2 3 19 19 H 1.09007 * 109.46753 * 60.00153 * 1 2 3 20 20 H 1.08999 * 109.47302 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.46919 * 299.99256 * 4 2 1 22 22 H 1.09001 * 109.46981 * 180.02562 * 4 2 1 23 23 H 1.08998 * 109.46903 * 179.97438 * 5 4 2 24 24 H 1.08990 * 109.47060 * 299.99952 * 5 4 2 25 25 H 1.09001 * 109.47429 * 60.00458 * 6 5 4 26 26 H 1.08999 * 109.46848 * 179.97438 * 6 5 4 27 27 H 0.97005 * 119.99947 * 180.02562 * 12 11 9 28 28 H 1.09007 * 109.46794 * 60.00505 * 17 2 1 29 29 H 1.09000 * 109.47660 * 180.02562 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.5298 -2.1637 1.2493 6 6 2.0399 -2.8850 0.0001 7 6 1.5299 -2.1639 -1.2491 8 1 0.4399 -2.1638 -1.2491 9 6 2.0318 -2.8747 -2.4796 10 1 3.0119 -2.6478 -2.8722 11 6 1.2396 -3.8147 -3.1039 12 7 1.7203 -4.5195 -4.1048 13 14 -0.5164 -4.0872 -2.5283 14 1 -1.4111 -3.0992 -3.1833 15 1 -0.9481 -5.4614 -2.8893 16 1 -0.5863 -3.9174 -1.0547 17 6 2.0400 -0.7214 -1.2491 18 1 -0.3634 0.5139 0.8900 19 1 -0.3633 0.5139 -0.8901 20 1 -0.3634 -1.0276 0.0005 21 1 1.6766 -0.2074 2.1392 22 1 3.1299 -0.7209 1.2495 23 1 1.8935 -2.6776 2.1391 24 1 0.4399 -2.1637 1.2493 25 1 3.1299 -2.8852 0.0002 26 1 1.6768 -3.9128 0.0004 27 1 1.1628 -5.1806 -4.5443 28 1 1.6767 -0.2075 -2.1392 29 1 3.1300 -0.7218 -1.2490 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259859856.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:14 Heat of formation + Delta-G solvation = -36.248173 kcal Electronic energy + Delta-G solvation = -10160.807428 eV Core-core repulsion = 8468.387342 eV Total energy + Delta-G solvation = -1692.420085 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.29813 -32.90246 -31.02428 -30.13115 -26.16303 -24.73848 -21.39316 -20.44875 -17.85435 -16.75673 -15.09346 -13.93484 -13.82424 -13.36310 -13.11804 -12.48815 -12.17395 -11.86718 -11.29745 -11.00359 -10.84477 -10.58319 -10.54343 -10.26059 -10.02782 -9.63351 -9.28361 -8.87233 -8.72656 -8.41570 -6.01299 -3.98428 3.32577 3.40551 3.43165 4.48125 5.27798 5.35583 5.42034 5.49425 5.92733 5.98067 6.02636 6.19862 6.30431 6.38108 6.44362 6.48904 6.59235 6.63292 6.76229 6.86094 6.97590 7.05348 7.22870 7.50105 7.65306 7.88869 8.61946 9.05217 9.63514 11.12634 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.057697 B = 0.017616 C = 0.016957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.174334 B = 1589.111591 C = 1650.833911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 H 0.054 0.946 4 C -0.107 4.107 5 C -0.125 4.125 6 C -0.109 4.109 7 C 0.013 3.987 8 H 0.033 0.967 9 C -0.509 4.509 10 H 0.070 0.930 11 C 0.068 3.932 12 N -0.905 5.905 13 Si 0.875 3.125 14 H -0.277 1.277 15 H -0.291 1.291 16 H -0.264 1.264 17 C -0.098 4.098 18 H 0.041 0.959 19 H 0.049 0.951 20 H 0.062 0.938 21 H 0.046 0.954 22 H 0.056 0.944 23 H 0.044 0.956 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.047 0.953 27 H 0.262 0.738 28 H 0.052 0.948 29 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.434 6.266 8.911 11.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.113 4.113 3 H 0.073 0.927 4 C -0.145 4.145 5 C -0.162 4.162 6 C -0.147 4.147 7 C -0.005 4.005 8 H 0.051 0.949 9 C -0.546 4.546 10 H 0.088 0.912 11 C -0.133 4.133 12 N -0.544 5.544 13 Si 0.703 3.297 14 H -0.203 1.203 15 H -0.218 1.218 16 H -0.189 1.189 17 C -0.136 4.136 18 H 0.061 0.939 19 H 0.068 0.932 20 H 0.081 0.919 21 H 0.065 0.935 22 H 0.075 0.925 23 H 0.063 0.937 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.477 6.116 8.770 10.975 hybrid contribution -0.925 -0.285 0.171 0.982 sum -3.401 5.831 8.941 11.203 Atomic orbital electron populations 1.21924 0.96204 1.02165 1.00261 1.21174 0.95453 0.98226 0.96495 0.92719 1.21491 1.00085 0.96126 0.96790 1.21680 1.00340 0.95514 0.98671 1.21794 1.00034 0.98662 0.94254 1.19174 0.96044 0.91565 0.93764 0.94919 1.21086 1.03738 1.20705 1.09111 0.91176 1.25073 0.98157 0.95254 0.94803 1.69925 1.36599 1.24110 1.23731 0.86882 0.85838 0.77158 0.79811 1.20282 1.21790 1.18867 1.21588 0.99657 0.97500 0.94811 0.93943 0.93173 0.91879 0.93485 0.92545 0.93681 0.92690 0.93102 0.93372 0.92837 0.92937 0.93174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 8.50 37.15 0.32 -2.10 15 2 C -0.09 -1.61 3.20 -90.62 -0.29 -1.90 15 3 H 0.05 0.84 8.14 -51.93 -0.42 0.42 15 4 C -0.11 -1.72 5.45 -26.73 -0.15 -1.87 15 5 C -0.12 -2.20 5.65 -26.73 -0.15 -2.36 15 6 C -0.11 -2.36 5.19 -26.73 -0.14 -2.49 15 7 C 0.01 0.31 1.51 -91.77 -0.14 0.18 15 8 H 0.03 0.79 3.52 -51.93 -0.18 0.60 15 9 C -0.51 -14.46 8.86 -34.44 -0.31 -14.77 15 10 H 0.07 2.17 8.06 -52.49 -0.42 1.75 15 11 C 0.07 1.99 5.47 -17.82 -0.10 1.89 15 12 N -0.91 -28.15 13.96 55.43 0.77 -27.37 15 13 Si 0.88 21.97 27.02 -169.99 -4.59 17.37 15 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 15 15 H -0.29 -7.30 7.11 56.52 0.40 -6.89 15 16 H -0.26 -6.32 6.78 56.52 0.38 -5.94 15 17 C -0.10 -2.01 4.71 -26.73 -0.13 -2.14 15 18 H 0.04 0.59 8.14 -51.93 -0.42 0.17 15 19 H 0.05 0.79 8.14 -51.93 -0.42 0.37 15 20 H 0.06 1.13 4.81 -51.93 -0.25 0.88 15 21 H 0.05 0.66 8.14 -51.93 -0.42 0.24 15 22 H 0.06 0.89 8.14 -51.93 -0.42 0.46 15 23 H 0.04 0.72 8.14 -51.93 -0.42 0.29 15 24 H 0.05 0.97 6.43 -51.93 -0.33 0.64 15 25 H 0.05 1.09 8.14 -51.93 -0.42 0.67 15 26 H 0.05 1.09 8.14 -51.93 -0.42 0.67 15 27 H 0.26 7.65 8.31 -40.82 -0.34 7.31 15 28 H 0.05 1.09 8.14 -51.93 -0.42 0.67 15 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 15 LS Contribution 223.05 15.07 3.36 3.36 Total: -1.00 -29.62 223.05 -6.11 -35.73 By element: Atomic # 1 Polarization: 1.05 SS G_CDS: -4.57 Total: -3.52 kcal Atomic # 6 Polarization: -24.49 SS G_CDS: -1.08 Total: -25.57 kcal Atomic # 7 Polarization: -28.15 SS G_CDS: 0.77 Total: -27.37 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.59 Total: 17.37 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -29.62 -6.11 -35.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259859856.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.522 kcal (2) G-P(sol) polarization free energy of solvation -29.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds