Wall clock time and date at job start Mon Mar 30 2020 02:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08993 * 109.47510 * 2 1 4 4 C 1.53001 * 109.46839 * 120.00069 * 2 1 3 5 5 C 1.52998 * 109.47416 * 59.99661 * 4 2 1 6 6 C 1.53002 * 109.46890 * 60.00204 * 5 4 2 7 7 C 1.52995 * 109.47281 * 299.99787 * 6 5 4 8 8 H 1.09000 * 109.46936 * 300.00527 * 7 6 5 9 9 C 1.50699 * 109.47425 * 180.02562 * 7 6 5 10 10 H 1.07994 * 120.00061 * 275.14845 * 9 7 6 11 11 C 1.37874 * 119.99855 * 95.14521 * 9 7 6 12 12 N 1.31512 * 119.99904 * 186.01457 * 11 9 7 13 13 Si 1.86797 * 120.00211 * 6.01540 * 11 9 7 14 14 H 1.48507 * 109.47084 * 84.77320 * 13 11 9 15 15 H 1.48499 * 109.47203 * 204.77153 * 13 11 9 16 16 H 1.48499 * 109.47397 * 324.77573 * 13 11 9 17 17 C 1.53000 * 109.47364 * 239.99367 * 2 1 3 18 18 H 1.09004 * 109.47211 * 300.00503 * 1 2 3 19 19 H 1.09007 * 109.46753 * 60.00153 * 1 2 3 20 20 H 1.08999 * 109.47302 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.46919 * 299.99256 * 4 2 1 22 22 H 1.09001 * 109.46981 * 180.02562 * 4 2 1 23 23 H 1.08998 * 109.46903 * 179.97438 * 5 4 2 24 24 H 1.08990 * 109.47060 * 299.99952 * 5 4 2 25 25 H 1.09001 * 109.47429 * 60.00458 * 6 5 4 26 26 H 1.08999 * 109.46848 * 179.97438 * 6 5 4 27 27 H 0.97005 * 119.99947 * 180.02562 * 12 11 9 28 28 H 1.09007 * 109.46794 * 60.00505 * 17 2 1 29 29 H 1.09000 * 109.47660 * 180.02562 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.5298 -2.1637 1.2493 6 6 2.0399 -2.8850 0.0001 7 6 1.5299 -2.1639 -1.2491 8 1 0.4399 -2.1638 -1.2491 9 6 2.0318 -2.8747 -2.4796 10 1 3.0119 -2.6478 -2.8722 11 6 1.2396 -3.8147 -3.1039 12 7 1.7203 -4.5195 -4.1048 13 14 -0.5164 -4.0872 -2.5283 14 1 -1.4111 -3.0992 -3.1833 15 1 -0.9481 -5.4614 -2.8893 16 1 -0.5863 -3.9174 -1.0547 17 6 2.0400 -0.7214 -1.2491 18 1 -0.3634 0.5139 0.8900 19 1 -0.3633 0.5139 -0.8901 20 1 -0.3634 -1.0276 0.0005 21 1 1.6766 -0.2074 2.1392 22 1 3.1299 -0.7209 1.2495 23 1 1.8935 -2.6776 2.1391 24 1 0.4399 -2.1637 1.2493 25 1 3.1299 -2.8852 0.0002 26 1 1.6768 -3.9128 0.0004 27 1 1.1628 -5.1806 -4.5443 28 1 1.6767 -0.2075 -2.1392 29 1 3.1300 -0.7218 -1.2490 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259859856.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:14 Heat of formation + Delta-G solvation = -53.964942 kcal Electronic energy + Delta-G solvation = -10161.575685 eV Core-core repulsion = 8468.387342 eV Total energy + Delta-G solvation = -1693.188342 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.83437 -34.96661 -32.67220 -31.83245 -27.53898 -26.73544 -22.90312 -22.20367 -19.51336 -18.77762 -16.83510 -15.69480 -15.31969 -15.03554 -14.65645 -14.48490 -13.69716 -13.33660 -13.01230 -12.84991 -12.42475 -12.23011 -12.11641 -11.79813 -11.65348 -11.51286 -11.02916 -10.60306 -10.53791 -10.47839 -8.28216 -6.29921 1.33355 1.34468 1.46096 2.35680 3.07973 3.97591 4.05692 4.12718 4.53867 4.59573 4.62699 4.69653 4.89051 4.93854 4.98115 5.05269 5.15231 5.19326 5.28351 5.41251 5.43819 5.49798 5.63564 5.72665 5.79543 5.92474 6.37084 6.78356 7.35403 8.89563 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.057697 B = 0.017616 C = 0.016957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.174334 B = 1589.111591 C = 1650.833911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 H 0.078 0.922 4 C -0.105 4.105 5 C -0.119 4.119 6 C -0.109 4.109 7 C 0.011 3.989 8 H 0.035 0.965 9 C -0.515 4.515 10 H 0.024 0.976 11 C 0.006 3.994 12 N -0.956 5.956 13 Si 0.941 3.059 14 H -0.266 1.266 15 H -0.290 1.290 16 H -0.243 1.243 17 C -0.097 4.097 18 H 0.072 0.928 19 H 0.048 0.952 20 H 0.045 0.955 21 H 0.081 0.919 22 H 0.057 0.943 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.040 0.960 26 H 0.030 0.970 27 H 0.264 0.736 28 H 0.040 0.960 29 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.991 7.557 11.380 14.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.109 4.109 3 H 0.097 0.903 4 C -0.143 4.143 5 C -0.157 4.157 6 C -0.148 4.148 7 C -0.007 4.007 8 H 0.053 0.947 9 C -0.554 4.554 10 H 0.043 0.957 11 C -0.190 4.190 12 N -0.597 5.597 13 Si 0.765 3.235 14 H -0.191 1.191 15 H -0.216 1.216 16 H -0.166 1.166 17 C -0.135 4.135 18 H 0.091 0.909 19 H 0.068 0.932 20 H 0.064 0.936 21 H 0.099 0.901 22 H 0.076 0.924 23 H 0.086 0.914 24 H 0.078 0.922 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.027 7.427 11.258 14.075 hybrid contribution -0.319 -0.674 -0.658 0.995 sum -4.346 6.753 10.600 13.298 Atomic orbital electron populations 1.21925 0.95346 1.01502 1.01827 1.21158 0.96153 0.98997 0.94636 0.90339 1.21506 1.00281 0.94964 0.97511 1.21629 1.00622 0.96419 0.96982 1.21685 0.99464 0.98048 0.95559 1.19178 0.96053 0.93143 0.92353 0.94693 1.21456 1.01980 1.20972 1.10948 0.95729 1.25996 1.03033 0.95031 0.94971 1.70085 1.38559 1.25363 1.25651 0.85817 0.79881 0.77242 0.80547 1.19073 1.21592 1.16617 1.21514 0.99061 0.95987 0.96935 0.90882 0.93244 0.93572 0.90085 0.92419 0.91420 0.92157 0.94079 0.95113 0.92740 0.94099 0.94179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.26 8.50 71.98 0.61 -3.64 15 2 C -0.09 -2.77 3.20 -10.80 -0.03 -2.81 15 3 H 0.08 2.07 8.14 -2.39 -0.02 2.05 15 4 C -0.11 -2.92 5.45 30.59 0.17 -2.75 15 5 C -0.12 -3.79 5.65 30.59 0.17 -3.62 15 6 C -0.11 -4.60 5.19 30.59 0.16 -4.44 15 7 C 0.01 0.54 1.51 -11.54 -0.02 0.52 15 8 H 0.04 1.62 3.52 -2.39 -0.01 1.62 15 9 C -0.52 -30.31 8.86 25.60 0.23 -30.09 15 10 H 0.02 1.61 8.06 -2.91 -0.02 1.58 15 11 C 0.01 0.33 5.47 84.65 0.46 0.80 15 12 N -0.96 -61.53 13.96 21.45 0.30 -61.23 15 13 Si 0.94 45.32 27.02 68.60 1.85 47.17 15 14 H -0.27 -12.25 7.11 99.48 0.71 -11.54 15 15 H -0.29 -13.78 7.11 99.48 0.71 -13.07 15 16 H -0.24 -10.76 6.78 99.48 0.67 -10.08 15 17 C -0.10 -3.92 4.71 30.60 0.14 -3.77 15 18 H 0.07 1.65 8.14 -2.39 -0.02 1.63 15 19 H 0.05 1.40 8.14 -2.38 -0.02 1.38 15 20 H 0.05 1.47 4.81 -2.39 -0.01 1.46 15 21 H 0.08 1.78 8.14 -2.39 -0.02 1.76 15 22 H 0.06 1.60 8.14 -2.39 -0.02 1.58 15 23 H 0.07 1.87 8.14 -2.39 -0.02 1.85 15 24 H 0.06 1.88 6.43 -2.39 -0.02 1.86 15 25 H 0.04 1.76 8.14 -2.39 -0.02 1.74 15 26 H 0.03 1.36 8.14 -2.39 -0.02 1.34 15 27 H 0.26 15.89 8.31 -92.70 -0.77 15.12 15 28 H 0.04 1.69 8.14 -2.38 -0.02 1.68 15 29 H 0.04 1.65 8.14 -2.39 -0.02 1.63 15 Total: -1.00 -65.39 223.05 5.11 -60.29 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: 1.06 Total: 3.58 kcal Atomic # 6 Polarization: -51.70 SS G_CDS: 1.89 Total: -49.81 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: 0.30 Total: -61.23 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.85 Total: 47.17 kcal Total: -65.39 5.11 -60.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259859856.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.320 kcal (2) G-P(sol) polarization free energy of solvation -65.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds